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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:phe03030]
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03410 Base excision repair [PATH:phe03410]
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03420 Nucleotide excision repair [PATH:phe03420]
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03430 Mismatch repair [PATH:phe03430]
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03440 Homologous recombination [PATH:phe03440]
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03450 Non-homologous end-joining [PATH:phe03450]
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 Phep_1712 Ku protein
Phep_1702 DNA ligase D
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K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:phe03000]
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03021 Transcription machinery [BR:phe03021]
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03019 Messenger RNA biogenesis [BR:phe03019]
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03041 Spliceosome [BR:phe03041]
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03011 Ribosome [BR:phe03011]
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03009 Ribosome biogenesis [BR:phe03009]
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03016 Transfer RNA biogenesis [BR:phe03016]
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03012 Translation factors [BR:phe03012]
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03110 Chaperones and folding catalysts [BR:phe03110]
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04131 Membrane trafficking [BR:phe04131]
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04121 Ubiquitin system [BR:phe04121]
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03051 Proteasome [BR:phe03051]
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03032 DNA replication proteins [BR:phe03032]
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03036 Chromosome and associated proteins [BR:phe03036]
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03400 DNA repair and recombination proteins [BR:phe03400]
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Phep_0781 methylated-DNA/protein-cysteine methyltransferase
Phep_2087 Deoxyribodipyrimidine photo-lyase
Phep_1556 uracil-DNA glycosylase
Phep_2041 DNA-3-methyladenine glycosylase
Phep_0129 helix-hairpin-helix motif protein
Phep_3556 endonuclease III
Phep_0162 S1/P1 nuclease
Phep_2414 NUDIX hydrolase
Phep_2728 NUDIX hydrolase
Phep_2567 NUDIX hydrolase
Phep_3292 NUDIX hydrolase
Phep_3841 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
Phep_0721 methylated-DNA/protein-cysteine methyltransferase
Phep_0314 methylated-DNA/protein-cysteine methyltransferase
Phep_0318 HhH-GPD family protein
Phep_4216 DNA-3-methyladenine glycosylase I
Phep_1739 DNA-formamidopyrimidine glycosylase
Phep_2614 DNA glycosylase/AP lyase, H2TH DNA-binding
Phep_4271 exodeoxyribonuclease III Xth
Phep_0877 exodeoxyribonuclease III Xth
Phep_1385 Endonuclease/exonuclease/phosphatase
Phep_3683 single-stranded-DNA-specific exonuclease RecJ
Phep_3318 DNA ligase, NAD-dependent
Phep_4214 DNA polymerase I
Phep_0509 excinuclease ABC, A subunit
Phep_3553 excinuclease ABC, A subunit
Phep_4036 excinuclease ABC, B subunit
Phep_0387 excinuclease ABC, C subunit
Phep_1437 UvrD/REP helicase
Phep_0849 DNA-directed RNA polymerase, beta subunit
Phep_0850 DNA-directed RNA polymerase, beta' subunit
Phep_0629 DNA-directed RNA polymerase, alpha subunit
Phep_0022 transcription-repair coupling factor
Phep_1883 DNA mismatch repair protein MutS
Phep_2920 Smr protein/MutS2
Phep_0481 DNA mismatch repair protein MutL
Phep_2199 Exodeoxyribonuclease VII
Phep_2198 Exonuclease VII small subunit
Phep_0866 DNA polymerase III, alpha subunit
Phep_1371 DNA polymerase III, alpha subunit
Phep_3235 DNA polymerase III, beta subunit
Phep_1251 DNA polymerase III, delta subunit
Phep_0075 DNA polymerase III gamma/tau subunit
Phep_1888 Exonuclease RNase T and DNA polymerase III
Phep_2656 DNA polymerase III, epsilon subunit
Phep_0736 DNA polymerase III, subunits gamma and tau
Phep_0130 single-strand binding protein
Phep_0930 DNA mismatch endonuclease Vsr
Phep_3557 recA protein
Phep_3832 Holliday junction DNA helicase RuvA
Phep_1893 Holliday junction DNA helicase RuvB
Phep_0400 crossover junction endodeoxyribonuclease RuvC
Phep_1550 primosomal protein N'
Phep_0125 DNA repair protein RadA
Phep_0534 DNA replication and repair protein RecF
Phep_0158 ATP-dependent DNA helicase RecG
Phep_0459 DNA repair protein RecO
Phep_3028 recombination protein RecR
Phep_1139 DNA repair protein RecN
Phep_0635 protein of unknown function DUF853 NPT hydrolase putative
Phep_1712 Ku protein
Phep_1702 DNA ligase D
Phep_2163 DNA gyrase, A subunit
Phep_0862 DNA gyrase, B subunit
Phep_2189 DNA topoisomerase I
Phep_1222 DNA topoisomerase
Phep_0128 histone family protein DNA-binding protein
Phep_2064 ATP-dependent DNA helicase RecQ
Phep_1902 ATP-dependent DNA helicase, RecQ family
Phep_2663 DNA-directed DNA polymerase
Phep_1370 DNA-directed DNA polymerase
Phep_2400 conserved hypothetical protein
Phep_2399 cytosolic protein
Phep_2398 DNA polymerase III, alpha subunit
Phep_3046 regulatory protein RecX
Phep_3075 PHP domain protein
Phep_2563 DEAD/H associated domain protein
Phep_0691 ribonucleoside-diphosphate reductase, alpha subunit
Phep_0690 Ribonucleoside-diphosphate reductase
Phep_0539 phosphoesterase RecJ domain protein
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K05986 NUCS; nuclease S1 [EC:3.1.30.1]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K02347 polX; DNA polymerase (family X)
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:phe03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Pedobacter heparinus