DNA Repair and Recombination Proteins - Protobothrops mucrosquamatus (Taiwan habu)

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     KO
 Eukaryotic Type
   SSBR (single strand breaks repair)
     Direct repair
     BER (base exicision repair)
       DNA glycosylases
       AP endonucleases
       Long Patch-BER factors
         DNA polymerase delta complex
         DNA polymerase epsilon complex
         107283633 PCNA; proliferating cell nuclear antigen
K04802 PCNA; proliferating cell nuclear antigen 
         107287983 FEN1; flap endonuclease 1
K04799 FEN1; flap endonuclease-1 [EC:3.-.-.-] 
         107297952 DNA ligase 1-like
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
         107285325 LIG1; DNA ligase 1
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
       Short Patch-BER factors
       Other BER factors
     NER (nucleotide excision repair)
       GGR (global genome repair) factors
       TCR (transcription coupled repair) factors
       TFIIH complex
       RPA (replication factor A)
       Other NER factors
         107295772 DNA repair protein complementing XP-A cells homolog
         107299497 DNA repair protein complementing XP-A cells homolog
         107285642 ERCC1; DNA excision repair protein ERCC-1
         107293802 ERCC4; DNA repair endonuclease XPF
         107301511 DNA repair protein complementing XP-G cells-like
         107282310 ERCC5; LOW QUALITY PROTEIN: DNA repair protein complementing XP-G cells
         107297952 DNA ligase 1-like
         107285325 LIG1; DNA ligase 1
         107294241 MMS19; MMS19 nucleotide excision repair protein homolog
         107293616 CUL3; cullin-3
         107284909 CUL5; cullin-5
         107297276 ELOC; elongin-C
         107294138 elongin-B isoform X1
         107282528 elongin-B isoform X1
         107290755 ELOA; elongin-A
K10847 XPA; DNA-repair protein complementing XP-A cells 
K10847 XPA; DNA-repair protein complementing XP-A cells 
K10849 ERCC1; DNA excision repair protein ERCC-1 
K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] 
K10846 ERCC5; DNA excision repair protein ERCC-5 
K10846 ERCC5; DNA excision repair protein ERCC-5 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K15075 MET18; DNA repair/transcription protein MET18/MMS19 
K03869 CUL3; cullin 3 
K10612 CUL5; cullin 5 
K03872 ELOC; elongin-C 
K03873 ELOB; elongin-B 
K03873 ELOB; elongin-B 
K15076 ELOA; elongin-A 
     MMR (mismatch excision repair)
       Mismatch and loop recognition factors
       MutS homologs specialized for meiosis
       MutL homologs
       DNA polymerase delta complex
       RPA (replication factor A)
       RFC (replication factor C)
       Other MMR factors
         107283633 PCNA; proliferating cell nuclear antigen
         107295487 exonuclease 1
         107300651 exonuclease 1-like
         107300817 exonuclease 1
         107286799 HMGB1; high mobility group protein B1
         107297952 DNA ligase 1-like
         107285325 LIG1; DNA ligase 1
K04802 PCNA; proliferating cell nuclear antigen 
K10746 EXO1; exonuclease 1 [EC:3.1.-.-] 
K10746 EXO1; exonuclease 1 [EC:3.1.-.-] 
K10746 EXO1; exonuclease 1 [EC:3.1.-.-] 
K10802 HMGB1; high mobility group protein B1 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
   DSBR (double strand breaks repair)
   TLS (translesion DNA synthesis) factors
   Check point factors
   Other factors with a suspected DNA repair function
 
 Prokaryotic Type

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Last updated: June 5, 2019