KEGG Orthology (KO) - Pseudomonas orientalis

[ Brite menu | Organism menu | Download htext | Download json ]
    

1st Level  2nd Level  3rd Level  4th Level 

     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:poi03030]
     03410 Base excision repair [PATH:poi03410]
     03420 Nucleotide excision repair [PATH:poi03420]
     03430 Mismatch repair [PATH:poi03430]
     03440 Homologous recombination [PATH:poi03440]
     03450 Non-homologous end-joining [PATH:poi03450]
       BOP93_13235 Ku protein
       BOP93_13240 ligD; ATP-dependent DNA ligase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
     03460 Fanconi anemia pathway
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:poi03000]
     03021 Transcription machinery [BR:poi03021]
     03019 Messenger RNA biogenesis [BR:poi03019]
     03041 Spliceosome
     03011 Ribosome [BR:poi03011]
     03009 Ribosome biogenesis [BR:poi03009]
     03016 Transfer RNA biogenesis [BR:poi03016]
     03012 Translation factors [BR:poi03012]
     03110 Chaperones and folding catalysts [BR:poi03110]
     04131 Membrane trafficking [BR:poi04131]
     04121 Ubiquitin system
     03051 Proteasome [BR:poi03051]
     03032 DNA replication proteins [BR:poi03032]
     03036 Chromosome and associated proteins [BR:poi03036]
     03400 DNA repair and recombination proteins [BR:poi03400]
       BOP93_06730 cysteine methyltransferase
       BOP93_03540 deoxyribodipyrimidine photolyase
       BOP93_06780 uracil-DNA glycosylase
       BOP93_22860 3-methyladenine DNA glycosylase
       BOP93_01490 A/G-specific adenine glycosylase
       BOP93_05580 endonuclease III
       BOP93_06300 ATP-dependent DNA ligase
       BOP93_14305 NUDIX hydrolase
       BOP93_20670 hypothetical protein
       BOP93_25595 deoxyuridine 5'-triphosphate nucleotidohydrolase
       BOP93_12800 bifunctional transcriptional activator/DNA repair enzyme protein Ada
       BOP93_12795 alpha-ketoglutarate-dependent dioxygenase AlkB
       BOP93_14485 3-methyladenine DNA glycosylase
       BOP93_00060 3-methyladenine DNA glycosylase
       BOP93_24700 DNA-formamidopyrimidine glycosylase
       BOP93_13720 exodeoxyribonuclease III
       BOP93_15900 exodeoxyribonuclease III
       BOP93_25615 exodeoxyribonuclease III
       BOP93_20990 single-stranded-DNA-specific exonuclease RecJ
       BOP93_24310 DNA ligase B
       BOP93_18975 DNA ligase (NAD(+)) LigA
       BOP93_00390 DNA polymerase I
       BOP93_23210 excinuclease ABC subunit A
       BOP93_14565 excinuclease ABC subunit A
       BOP93_17050 excinuclease ABC subunit B
       BOP93_09575 excinuclease ABC subunit C
       BOP93_26060 DNA helicase II
       BOP93_23385 DNA-directed RNA polymerase subunit beta
       BOP93_23380 DNA-directed RNA polymerase subunit beta'
       BOP93_23230 DNA-directed RNA polymerase subunit alpha
       BOP93_25640 DNA-directed RNA polymerase subunit omega
       BOP93_07520 transcription-repair coupling factor
       BOP93_05605 DNA mismatch repair protein MutS
       BOP93_02405 DNA mismatch repair protein MutL
       BOP93_20725 exodeoxyribonuclease I
       BOP93_21235 exodeoxyribonuclease VII large subunit
       BOP93_23015 exodeoxyribonuclease VII small subunit
       BOP93_06160 DNA polymerase III subunit alpha
       BOP93_00010 DNA polymerase III subunit beta
       BOP93_05070 DNA polymerase III subunit chi
       BOP93_22780 DNA polymerase III subunit delta
       BOP93_19515 DNA polymerase III subunit delta'
       BOP93_22610 DNA polymerase III subunit epsilon
       BOP93_14225 DNA polymerase III subunit epsilon
       BOP93_23945 DNA polymerase III subunit epsilon
       BOP93_18915 hypothetical protein
       BOP93_23200 single-stranded DNA-binding protein
       BOP93_15125 restriction endonuclease subunit M
       BOP93_21960 exodeoxyribonuclease V subunit beta
       BOP93_21965 exodeoxyribonuclease V subunit gamma
       BOP93_21955 exodeoxyribonuclease V subunit alpha
       BOP93_05735 recombinase RecA
       BOP93_20590 Holliday junction DNA helicase RuvA
       BOP93_20585 Holliday junction DNA helicase RuvB
       BOP93_20595 crossover junction endodeoxyribonuclease RuvC
       BOP93_01855 primosomal protein N'
       BOP93_10945 chromosome segregation protein SMC
       BOP93_10950 exonuclease SbcCD subunit D
       BOP93_22435 DNA repair protein RadA
       BOP93_00015 DNA replication/repair protein RecF
       BOP93_25685 ATP-dependent DNA helicase RecG
       BOP93_05110 DNA repair protein RecO
       BOP93_18900 recombination protein RecR
       BOP93_22265 DNA repair protein RecN
       BOP93_08830 recombination-associated protein RdgC
       BOP93_13235 Ku protein
       BOP93_13240 ligD; ATP-dependent DNA ligase
       BOP93_07805 DNA gyrase subunit A
       BOP93_00020 DNA gyrase subunit B
       BOP93_07475 DNA topoisomerase I
       BOP93_12825 DNA topoisomerase
       BOP93_25830 integration host factor
       BOP93_05050 dipicolinate synthase
       BOP93_16110 DNA-binding protein HU
       BOP93_02885 Fis family transcriptional regulator
       BOP93_16710 integration host factor subunit alpha
       BOP93_07845 integration host factor subunit beta
       BOP93_18385 ATP-dependent DNA helicase RecQ
       BOP93_01295 recombinase RecQ
       BOP93_20965 DNA polymerase IV
       BOP93_13270 DNA polymerase V subunit UmuC
       BOP93_13275 peptidase S24
       BOP93_07495 repressor LexA
       BOP93_14590 repressor LexA
       BOP93_09095 DNA polymerase II
       BOP93_14580 DNA repair nucleotidyltransferase
       BOP93_14575 dnaE2; error-prone DNA polymerase
       BOP93_05740 recombination regulator RecX
       BOP93_25490 ATP-dependent DNA helicase Rep
       BOP93_06345 ATP-dependent DNA helicase DinG
       BOP93_06270 DNA ligase-associated DEXH box helicase
       BOP93_23140 ATP-dependent DNA helicase
       BOP93_19645 ribonucleoside-diphosphate reductase subunit alpha
       BOP93_13750 ribonucleotide-diphosphate reductase subunit beta
       BOP93_19880 ribonucleotide-diphosphate reductase subunit beta
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phrB; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:3.6.4.12]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:3.6.4.12]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
     03029 Mitochondrial biogenesis [BR:poi03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

[ KO | BRITE | KEGG2 | KEGG ]
Last updated: January 22, 2020