KEGG Orthology (KO) - Pseudomonas putida BIRD-1

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:ppb03030]
     03410 Base excision repair [PATH:ppb03410]
       PPUBIRD1_4915 mutM; MutM
       PPUBIRD1_1142 Endonuclease III
       PPUBIRD1_0747 DNA-3-methyladenine glycosylase II
       PPUBIRD1_0091 tag; Tag
       PPUBIRD1_4144 ung; Uracil-DNA glycosylase
       PPUBIRD1_0315 mutY; MutY
       PPUBIRD1_4595 3-methyladenine DNA glycosylase
       PPUBIRD1_5085 crc; Crc
       PPUBIRD1_2845 Exonuclease III
       PPUBIRD1_2965 Exodeoxyribonuclease III
       PPUBIRD1_0151 polA; PolA
       PPUBIRD1_4082 Single-stranded-DNA-specific exonuclease RecJ
       PPUBIRD1_4752 ligB; LigB
       PPUBIRD1_1581 ligA; LigA
       PPUBIRD1_1155 ATP-dependent DNA ligase
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
     03420 Nucleotide excision repair [PATH:ppb03420]
     03430 Mismatch repair [PATH:ppb03430]
     03440 Homologous recombination [PATH:ppb03440]
     03450 Non-homologous end-joining [PATH:ppb03450]
     03460 Fanconi anemia pathway
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:ppb03000]
     03021 Transcription machinery [BR:ppb03021]
     03019 Messenger RNA biogenesis [BR:ppb03019]
     03041 Spliceosome
     03011 Ribosome [BR:ppb03011]
     03009 Ribosome biogenesis [BR:ppb03009]
     03016 Transfer RNA biogenesis [BR:ppb03016]
     03012 Translation factors [BR:ppb03012]
     03110 Chaperones and folding catalysts [BR:ppb03110]
     04131 Membrane trafficking [BR:ppb04131]
     04121 Ubiquitin system [BR:ppb04121]
     03051 Proteasome [BR:ppb03051]
     03032 DNA replication proteins [BR:ppb03032]
     03036 Chromosome and associated proteins [BR:ppb03036]
     03400 DNA repair and recombination proteins [BR:ppb03400]
       PPUBIRD1_2659 Methylated-DNA--protein-cysteine methyltransferase
       PPUBIRD1_0785 phrB; PhrB
       PPUBIRD1_4144 ung; Uracil-DNA glycosylase
       PPUBIRD1_4595 3-methyladenine DNA glycosylase
       PPUBIRD1_0315 mutY; MutY
       PPUBIRD1_1142 Endonuclease III
       PPUBIRD1_1155 ATP-dependent DNA ligase
       PPUBIRD1_4214 Hypothetical protein
       PPUBIRD1_2506 NUDIX hydrolase
       PPUBIRD1_5080 dut; Dut
       PPUBIRD1_0748 Methylated-DNA--protein-cysteine methyltransferase
       PPUBIRD1_2390 2OG-Fe(II) oxygenase
       PPUBIRD1_0747 DNA-3-methyladenine glycosylase II
       PPUBIRD1_0091 tag; Tag
       PPUBIRD1_4915 mutM; MutM
       PPUBIRD1_5085 crc; Crc
       PPUBIRD1_2845 Exonuclease III
       PPUBIRD1_2965 Exodeoxyribonuclease III
       PPUBIRD1_4082 Single-stranded-DNA-specific exonuclease RecJ
       PPUBIRD1_4752 ligB; LigB
       PPUBIRD1_1581 ligA; LigA
       PPUBIRD1_0151 polA; PolA
       PPUBIRD1_0520 uvrA; UvrA
       PPUBIRD1_2630 UvrABC system protein A
       PPUBIRD1_3695 uvrB; UvrB
       PPUBIRD1_1752 uvrC; UvrC
       PPUBIRD1_0021 uvrD; UvrD
       PPUBIRD1_0484 rpoB; RpoB
       PPUBIRD1_0485 rpoC; RpoC
       PPUBIRD1_0516 rpoA; RpoA
       PPUBIRD1_5094 rpoZ; RpoZ
       PPUBIRD1_3506 mfd; Mfd
       PPUBIRD1_3990 mutS; MutS
       PPUBIRD1_4683 mutL; MutL
       PPUBIRD1_4197 sbcB; SbcB
       PPUBIRD1_1077 xseA; XseA
       PPUBIRD1_0569 Exodeoxyribonuclease VII small subunit
       PPUBIRD1_4009 dnaE; DnaE
       PPUBIRD1_0075 dnaN; DnaN
       PPUBIRD1_1030 holC; HolC
       PPUBIRD1_4579 holA; HolA
       PPUBIRD1_3703 holB; HolB
       PPUBIRD1_4524 DNA polymerase III
       PPUBIRD1_0389 DNA polymerase III
       PPUBIRD1_1708 dnaQ; DnaQ
       PPUBIRD1_1587 dnaX; DnaX
       PPUBIRD1_0522 ssb; Ssb
       PPUBIRD1_2786 Single-strand binding protein
       PPUBIRD1_2746 Prophage PSPPH02
       PPUBIRD1_4372 Exodeoxyribonuclease V
       PPUBIRD1_4373 recB; RecB
       PPUBIRD1_4374 recC; RecC
       PPUBIRD1_4371 recD; RecD
       PPUBIRD1_3987 recA; RecA
       PPUBIRD1_1253 ruvA; RuvA
       PPUBIRD1_1254 ruvB; RuvB
       PPUBIRD1_1252 ruvC; RuvC
       PPUBIRD1_4877 priA; PriA
       PPUBIRD1_3627 sbcC; SbcC
       PPUBIRD1_3626 Nuclease SbcCD
       PPUBIRD1_4340 radA; RadA
       PPUBIRD1_0076 recF; RecF
       PPUBIRD1_5103 recG; RecG
       PPUBIRD1_4121 recO; RecO
       PPUBIRD1_1589 recR; RecR
       PPUBIRD1_4432 DNA repair protein RecN
       PPUBIRD1_3915 rdgC; RdgC
       PPUBIRD1_2520 Ku family containing protein
       PPUBIRD1_2515 ligD; LigD
       PPUBIRD1_3846 DNA gyrase subunit A
       PPUBIRD1_0077 gyrB; GyrB
       PPUBIRD1_3515 topA; TopA
       PPUBIRD1_1949 DNA topoisomerase
       PPUBIRD1_5106 hupA; HupA
       PPUBIRD1_1026 hupN; HupN
       PPUBIRD1_3382 hupB; HupB
       PPUBIRD1_4604 fis; Fis
       PPUBIRD1_3207 ihfA; IhfA
       PPUBIRD1_3839 ihfB; IhfB
       PPUBIRD1_1384 recQ; RecQ
       PPUBIRD1_1239 dinP; DinP
       PPUBIRD1_1887 DNA-directed DNA polymerase
       PPUBIRD1_1888 DNA-directed DNA polymerase
       PPUBIRD1_2745 DNA-directed DNA polymerase
       PPUBIRD1_2619 LexA repressor
       PPUBIRD1_3511 lexA; LexA
       PPUBIRD1_3291 polB; PolB
       PPUBIRD1_2617 Hypothetical protein
       PPUBIRD1_2616 dnaE2; DnaE2
       PPUBIRD1_3986 recX; RecX
       PPUBIRD1_5058 rep; Rep
       PPUBIRD1_1171 dinG; DinG
       PPUBIRD1_1111 DEAD/H associated domain protein
       PPUBIRD1_1153 DEAD/DEAH box helicase domain-containing protein
       PPUBIRD1_1220 nrdA; NrdA
       PPUBIRD1_1218 nrdB; NrdB
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phrB; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03502 umuC; DNA polymerase V
K03502 umuC; DNA polymerase V
K01356 lexA; repressor LexA [EC:3.4.21.88]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:3.6.4.12]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:3.6.4.12]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
     03029 Mitochondrial biogenesis [BR:ppb03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: January 17, 2020