KEGG Orthology (KO) - Pseudomonas putida DLL-E4

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:ppud03030]
     03410 Base excision repair [PATH:ppud03410]
     03420 Nucleotide excision repair [PATH:ppud03420]
     03430 Mismatch repair [PATH:ppud03430]
     03440 Homologous recombination [PATH:ppud03440]
     03450 Non-homologous end-joining [PATH:ppud03450]
       DW66_2979 hypothetical protein
       DW66_2974 ATP-dependent DNA ligase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
     03460 Fanconi anemia pathway
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:ppud03000]
     03021 Transcription machinery [BR:ppud03021]
     03019 Messenger RNA biogenesis [BR:ppud03019]
     03041 Spliceosome
     03011 Ribosome [BR:ppud03011]
     03009 Ribosome biogenesis [BR:ppud03009]
     03016 Transfer RNA biogenesis [BR:ppud03016]
     03012 Translation factors [BR:ppud03012]
     03110 Chaperones and folding catalysts [BR:ppud03110]
     04131 Membrane trafficking [BR:ppud04131]
     04121 Ubiquitin system [BR:ppud04121]
     03051 Proteasome [BR:ppud03051]
     03032 DNA replication proteins [BR:ppud03032]
     03036 Chromosome and associated proteins [BR:ppud03036]
     03400 DNA repair and recombination proteins [BR:ppud03400]
       DW66_2875 methylated-DNA--protein-cysteine methyltransferase
       DW66_0758 deoxyribodipyrimidine photo-lyase
       DW66_4626 uracil-DNA glycosylase
       DW66_5044 3-methyladenine DNA glycosylase
       DW66_0290 A/G-specific adenine glycosylase
       DW66_4554 endonuclease III
       DW66_4541 ATP-dependent DNA ligase
       DW66_2930 DNA mismatch repair protein MutT
       DW66_2964 MutT/nudix protein
       DW66_4735 Mutator mutT protein (7
       DW66_5707 deoxyuridine 5'-triphosphate nucleotidohydrolase
       DW66_0711 methylated-DNA--protein-cysteine methyltransferase
       DW66_3130 2OG-Fe(II) oxygenase
       DW66_0710 DNA-3-methyladenine glycosylase II
       DW66_3134 alcohol dehydrogenase
       DW66_0037 DNA-3-methyladenine glycosylase I
       DW66_5363 formamidopyrimidine-DNA glycosylase
       DW66_3289 exonuclease III
       DW66_2511 exodeoxyribonuclease III
       DW66_5711 exodeoxyribonuclease III
       DW66_1410 single-stranded-DNA-specific exonuclease RecJ
       DW66_1076 single-stranded-DNA-specific exonuclease RecJ
       DW66_4104 NAD-dependent DNA ligase LigA
       DW66_5200 NAD-dependent DNA ligase LigB
       DW66_0098 DNA polymerase I
       DW66_0493 excinuclease ABC subunit A
       DW66_3107 excinuclease ABC subunit A
       DW66_1849 excinuclease ABC subunit B
       DW66_3941 excinuclease ABC subunit C
       DW66_5773 DNA-dependent helicase II
       DW66_0456 DNA-directed RNA polymerase subunit beta
       DW66_0457 DNA-directed RNA polymerase subunit beta
       DW66_0489 DNA-directed RNA polymerase subunit alpha
       DW66_5720 DNA-directed RNA polymerase subunit omega
       DW66_2006 transcription-repair coupling factor
       DW66_1504 DNA mismatch repair protein MutS
       DW66_1170 DNA mismatch repair protein MutS
       DW66_5129 DNA mismatch repair protein
       DW66_4678 exonuclease I
       DW66_1015 exodeoxyribonuclease VII large subunit
       DW66_1340 exodeoxyribonuclease VII large subunit
       DW66_0538 exodeoxyribonuclease VII small subunit
       DW66_1486 DNA polymerase III subunit alpha
       DW66_1152 DNA polymerase III subunit alpha
       DW66_0022 DNA polymerase III subunit beta
       DW66_0969 DNA polymerase III subunit chi
       DW66_5028 DNA polymerase III subunit delta
       DW66_1840 DNA polymerase III subunit delta
       DW66_0363 DNA polymerase III subunit epsilon
       DW66_3985 DNA polymerase III subunit epsilon
       DW66_4998 DNA polymerase III subunit epsilon
       DW66_4099 DNA polymerase III subunits gamma and tau
       DW66_0495 single-stranded DNA-binding protein
       DW66_3824 D12 class N6 adenine-specific DNA methyltransferase
       DW66_4906 exodeoxyribonuclease V subunit beta
       DW66_4907 exodeoxyribonuclease V subunit gamma
       DW66_4905 exodeoxyribonuclease V subunit alpha
       DW66_1566 recombinase A
       DW66_1172 recombinase A
       DW66_1173 recA protein
       DW66_1204 recombinase RecA
       DW66_4440 Holliday junction DNA helicase RuvA
       DW66_4439 Holliday junction DNA helicase RuvB
       DW66_4441 Holliday junction resolvase
       DW66_5325 primosome assembly protein PriA
       DW66_1900 SMC domain-containing protein
       DW66_1901 nuclease SbcCD subunit D
       DW66_4866 DNA repair protein RadA
       DW66_0023 recombination protein F
       DW66_5729 ATP-dependent DNA helicase RecG
       DW66_4604 DNA repair protein RecO
       DW66_4097 recombination protein RecR
       DW66_4967 DNA repair protein RecN
       DW66_1275 recombination associated protein
       DW66_1636 recombination associated protein
       DW66_2979 hypothetical protein
       DW66_2974 ATP-dependent DNA ligase
       DW66_1697 DNA gyrase subunit A
       DW66_0024 DNA gyrase subunit B
       DW66_3742 DNA topoisomerase
       DW66_1995 DNA topoisomerase I
       DW66_5732 DNA-binding protein
       DW66_2135 DNA-binding protein
       DW66_0965 DNA-binding protein
       DW66_5053 DNA-binding protein Fis
       DW66_2292 integration host factor subunit alpha
       DW66_1704 integration host factor subunit beta
       DW66_4300 ATP-dependent DNA helicase RecQ
       DW66_4453 DNA polymerase IV
       DW66_3615 DNA-directed DNA polymerase
       DW66_3071 LexA repressor
       DW66_1999 LexA repressor
       DW66_2235 DNA polymerase II
       DW66_3069 DNA polymerase-like protein
       DW66_3068 error-prone DNA polymerase
       DW66_1567 recombination regulator RecX
       DW66_1205 recombination regulator RecX
       DW66_5686 ATP-dependent DNA helicase Rep
       DW66_4527 ATP-dependent DNA helicase DinG
       DW66_4543 DEAD/DEAH box helicase
       DW66_4585 DEAD/DEAH box helicase
       DW66_4475 ribonucleotide-diphosphate reductase subunit alpha
       DW66_3520 ribonucleotide-diphosphate reductase subunit alpha
       DW66_4477 ribonucleotide-diphosphate reductase subunit beta
       DW66_3522 ribonucleotide-diphosphate reductase subunit beta
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phrB; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
K03555 mutS; DNA mismatch repair protein MutS
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03553 recA; recombination protein RecA
K03553 recA; recombination protein RecA
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K03554 rdgC; recombination associated protein RdgC
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K01356 lexA; repressor LexA [EC:3.4.21.88]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:3.6.4.12]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:3.6.4.12]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
     03029 Mitochondrial biogenesis [BR:ppud03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: June 23, 2019