09100 Metabolism
09120 Genetic Information Processing
09121 Transcription
09122 Translation
09123 Folding, sorting and degradation
09124 Replication and repair
03030 DNA replication [PATH:psem03030]
03410 Base excision repair [PATH:psem03410]
03420 Nucleotide excision repair [PATH:psem03420]
03430 Mismatch repair [PATH:psem03430]
03440 Homologous recombination [PATH:psem03440]
03450 Non-homologous end-joining [PATH:psem03450]
TO66_14820 DNA repair protein TO66_14815 ligD; ATP-dependent DNA ligase
K10979 ku; DNA end-binding protein Ku K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
03460 Fanconi anemia pathway
09126 Chromosome
09125 Information processing in viruses
09130 Environmental Information Processing
09140 Cellular Processes
09150 Organismal Systems
09160 Human Diseases
09180 Brite Hierarchies
09181 Protein families: metabolism
09182 Protein families: genetic information processing
03000 Transcription factors [BR:psem03000]
03021 Transcription machinery [BR:psem03021]
03019 Messenger RNA biogenesis [BR:psem03019]
03041 Spliceosome
03011 Ribosome [BR:psem03011]
03009 Ribosome biogenesis [BR:psem03009]
03016 Transfer RNA biogenesis [BR:psem03016]
03012 Translation factors [BR:psem03012]
03110 Chaperones and folding catalysts [BR:psem03110]
04131 Membrane trafficking [BR:psem04131]
04121 Ubiquitin system [BR:psem04121]
03051 Proteasome [BR:psem03051]
03032 DNA replication proteins [BR:psem03032]
03036 Chromosome and associated proteins [BR:psem03036]
03400 DNA repair and recombination proteins [BR:psem03400]
TO66_25930 cysteine methyltransferase TO66_26115 deoxyribodipyrimidine photolyase TO66_07120 uracil-DNA glycosylase TO66_27650 3-methyladenine DNA glycosylase TO66_01730 adenine glycosylase TO66_24830 endonuclease III TO66_16480 ATP-dependent DNA helicase TO66_15825 hypothetical protein TO66_10630 NUDIX hydrolase TO66_24445 hypothetical protein TO66_25040 DNA mismatch repair protein MutT TO66_12040 ADP-ribose pyrophosphatase TO66_30825 deoxyuridine 5'-triphosphate nucleotidohydrolase TO66_01865 6-O-methylguanine DNA methyltransferase TO66_17665 6-O-methylguanine DNA methyltransferase TO66_17660 alpha-ketoglutarate-dependent dioxygenase TO66_24140 DNA-3-methyladenine glycosylase TO66_12985 DNA-3-methyladenine glycosylase TO66_00070 3-methyladenine DNA glycosylase TO66_29685 5-hydroxymethyluracil DNA glycosylase TO66_15890 exodeoxyribonuclease III TO66_20370 exonuclease III TO66_30845 exodeoxyribonuclease III TO66_05595 ssDNA exonuclease RecJ TO66_29280 NAD-dependent DNA ligase LigB TO66_09720 NAD-dependent DNA ligase LigA TO66_00400 DNA polymerase I TO66_19420 excinuclease ABC subunit A TO66_28005 excinuclease ABC subunit A TO66_10410 excinuclease ABC subunit B TO66_19015 uvrC; excinuclease ABC subunit C TO66_30615 DNA helicase UvrD TO66_31280 uvrD; DNA-dependent helicase II TO66_28180 rpoB; DNA-directed RNA polymerase subunit beta TO66_28175 DNA-directed RNA polymerase subunit beta' TO66_28025 DNA-directed RNA polymerase subunit alpha TO66_30870 DNA-directed RNA polymerase subunit omega TO66_10000 transcription-repair coupling factor TO66_06060 DNA mismatch repair protein MutS TO66_02705 mutL; DNA mismatch repair protein TO66_24510 sbcB; exonuclease I TO66_25220 exodeoxyribonuclease TO66_27815 exodeoxyribonuclease VII small subunit TO66_05970 DNA polymerase III subunit alpha TO66_00010 DNA polymerase III subunit beta TO66_05365 DNA polymerase III subunit chi TO66_27570 DNA polymerase III subunit delta TO66_08995 DNA polymerase III subunit delta' TO66_28900 DNA polymerase III subunit epsilon TO66_13765 DNA polymerase III subunit epsilon TO66_27425 DNA polymerase III subunit epsilon TO66_09755 DNA polymerase III subunit gamma/tau TO66_27995 single-stranded DNA-binding protein TO66_03550 exodeoxyribonuclease V subunit beta TO66_03545 exodeoxyribonuclease V subunit gamma TO66_03555 exodeoxyribonuclease V subunit alpha TO66_06285 recombinase RecA TO66_24370 ATP-dependent DNA helicase RuvA TO66_24365 ruvB; ATP-dependent DNA helicase RuvB TO66_24375 crossover junction endodeoxyribonuclease RuvC TO66_02145 primosomal protein N' TO66_13880 chromosome segregation protein SMC TO66_13885 exonuclease SbcD TO66_27220 DNA repair protein RadA TO66_00015 recombinase RecF TO66_30915 ATP-dependent DNA helicase RecG TO66_05405 DNA recombination protein RecO TO66_09770 recR; recombination protein RecR TO66_04170 recombination and repair protein TO66_23040 recombinase RdgC TO66_25445 CRISPR-associated protein Cas1 TO66_24470 ATP-binding protein TO66_14820 DNA repair protein TO66_14815 ligD; ATP-dependent DNA ligase TO66_22600 DNA gyrase subunit A TO66_00020 gyrB; DNA gyrase subunit B TO66_09945 DNA topoisomerase I TO66_17700 DNA topoisomerase TO66_31045 integration host factor TO66_05345 dipicolinate synthase TO66_20600 transcriptional regulator HU subunit alpha TO66_03185 Fis family transcriptional regulator TO66_10775 ihfA; integration host factor subunit alpha TO66_22560 integration host factor subunit beta TO66_01505 ATP-dependent DNA helicase RecQ TO66_07810 ATP-dependent DNA helicase RecQ TO66_06385 DNA polymerase IV TO66_22155 RulA protein TO66_09975 LexA family transcriptional regulator TO66_19445 LexA family transcriptional regulator TO66_12150 DNA polymerase II TO66_19440 CDP-6-deoxy-delta-3,4-glucoseen reductase TO66_19435 DNA repair nucleotidyltransferase TO66_19430 dnaE2; DNA polymerase TO66_06290 recombinase RecX TO66_30715 ATP-dependent DNA helicase Rep TO66_06520 ATP-dependent DNA helicase DinG TO66_27950 ATP-dependent DNA helicase TO66_23370 ribonucleotide-diphosphate reductase subunit alpha TO66_23620 ribonucleotide-diphosphate reductase subunit beta
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K01520 dut; dUTP diphosphatase [EC:3.6.1.23] K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K02335 polA; DNA polymerase I [EC:2.7.7.7] K03701 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A K03702 uvrB; excinuclease ABC subunit B K03703 uvrC; excinuclease ABC subunit C K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] K03555 mutS; DNA mismatch repair protein MutS K03572 mutL; DNA mismatch repair protein MutL K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K03111 ssb; single-strand DNA-binding protein K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] K03553 recA; recombination protein RecA K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] K03546 sbcC; DNA repair protein SbcC/Rad50 K03547 sbcD; DNA repair protein SbcD/Mre11 K04485 radA; DNA repair protein RadA/Sms K03629 recF; DNA replication and repair protein RecF K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03584 recO; DNA repair protein RecO (recombination protein O) K06187 recR; recombination protein RecR K03631 recN; DNA repair protein RecN (Recombination protein N) K03554 rdgC; recombination associated protein RdgC K15342 cas1; CRISP-associated protein Cas1 K06915 herA; DNA double-strand break repair helicase HerA and related ATPase K10979 ku; DNA end-binding protein Ku K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K05787 hupA; DNA-binding protein HU-alpha K03530 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein K04764 ihfA; integration host factor subunit alpha K05788 ihfB; integration host factor subunit beta K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K03503 umuD; DNA polymerase V [EC:3.4.21.-] K01356 lexA; repressor LexA [EC:3.4.21.88] K01356 lexA; repressor LexA [EC:3.4.21.88] K02336 polB; DNA polymerase II [EC:2.7.7.7] K14160 imuA; protein ImuA K14161 imuB; protein ImuB K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] K03565 recX; regulatory protein K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
03029 Mitochondrial biogenesis [BR:psem03029]
09183 Protein families: signaling and cellular processes
09185 Viral protein families
09184 RNA family
09190 Not Included in Pathway or Brite
KEGG Orthology (KO) - Pseudomonas sp. MRSN12121 KEGG Orthology (KO) - Pseudomonas sp. MRSN12121