DNA Repair and Recombination Proteins - Pelodiscus sinensis (Chinese soft-shelled turtle)

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     KO
 Eukaryotic type
   SSBR (single strand breaks repair)
     Direct repair
     BER (base exicision repair)
       DNA glycosylases
       AP endonucleases
       Long Patch-BER factors
         DNA polymerase delta complex
         DNA polymerase epsilon complex
         102463110 PCNA; proliferating cell nuclear antigen
K04802 PCNA; proliferating cell nuclear antigen 
         102460771 FEN1; flap endonuclease 1
K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] 
         102443770 LIG1; DNA ligase 1
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
       Short Patch-BER factors
       Other BER factors
     NER (nucleotide excision repair)
       GGR (global genome repair) factors
       TCR (transcription coupled repair) factors
       TFIIH complex
       RPA (replication factor A)
       Other NER factors
         102458966 XPA; DNA repair protein complementing XP-A cells
         102456222 ERCC1; DNA excision repair protein ERCC-1 isoform X1
         102457695 ERCC4; LOW QUALITY PROTEIN: DNA repair endonuclease XPF
         102444400 ERCC5; DNA repair protein complementing XP-G cells isoform X1
         102443770 LIG1; DNA ligase 1
         102451845 CUL3; cullin-3
         102463394 CUL5; cullin-5
         102444242 ELOC; elongin-C
         102443429 ELOA; elongin-A
         102453875 elongin-A-like
         102458313 UBAP2L; ubiquitin-associated protein 2-like
         102450257 UBAP2; ubiquitin-associated protein 2 isoform X3
K10847 XPA; DNA-repair protein complementing XP-A cells 
K10849 ERCC1; DNA excision repair protein ERCC-1 
K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] 
K10846 ERCC5; DNA excision repair protein ERCC-5 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K03869 CUL3; cullin 3 
K10612 CUL5; cullin 5 
K03872 ELOC; elongin-C 
K15076 ELOA; elongin-A 
K15076 ELOA; elongin-A 
K26545 UBAP2; ubiquitin-associated protein 2 
K26545 UBAP2; ubiquitin-associated protein 2 
     MMR (mismatch excision repair)
       Mismatch and loop recognition factors
       MutL homologs
       DNA polymerase delta complex
       RPA (replication factor A)
       RFC (replication factor C)
       Other MMR factors
         102463110 PCNA; proliferating cell nuclear antigen
         102462984 EXO1; exonuclease 1
         102454149 HMGB1; high mobility group protein B1
         102443770 LIG1; DNA ligase 1
         102457473 WDR76; WD repeat-containing protein 76
K04802 PCNA; proliferating cell nuclear antigen 
K10746 EXO1; exonuclease 1 [EC:3.1.-.-] 
K10802 HMGB1; high mobility group protein B1 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K24755 WDR76; WD repeat-containing protein 76 
   DSBR (double strand breaks repair)
   TLS (translesion DNA synthesis) factors
   Check point factors
   Other factors with a suspected DNA repair function
 
 Prokaryotic type

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Last updated: February 5, 2024