DNA Repair and Recombination Proteins - Pelodiscus sinensis (Chinese soft-shelled turtle)

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     KO
 Eukaryotic Type
   SSBR (single strand breaks repair)
     Direct repair
     BER (base exicision repair)
       DNA glycosylases
       AP endonucleases
       Long Patch-BER factors
         DNA polymerase delta complex
         DNA polymerase epsilon complex
         102463110 PCNA; proliferating cell nuclear antigen
K04802 PCNA; proliferating cell nuclear antigen 
         102460771 FEN1; flap endonuclease 1
K04799 FEN1; flap endonuclease-1 [EC:3.-.-.-] 
         102443770 LIG1; DNA ligase 1
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
       Short Patch-BER factors
       Other BER factors
     NER (nucleotide excision repair)
       GGR (global genome repair) factors
       TCR (transcription coupled repair) factors
       TFIIH complex
       RPA (replication factor A)
       Other NER factors
         102458966 XPA; DNA repair protein complementing XP-A cells
         102456222 ERCC1; DNA excision repair protein ERCC-1 isoform X1
         102457695 ERCC4; LOW QUALITY PROTEIN: DNA repair endonuclease XPF
         102444400 ERCC5; DNA repair protein complementing XP-G cells isoform X1
         102443770 LIG1; DNA ligase 1
         102451845 CUL3; cullin-3
         102463394 CUL5; cullin-5
         102444242 ELOC; elongin-C
         102443429 ELOA; elongin-A
         102453875 elongin-A-like
K10847 XPA; DNA-repair protein complementing XP-A cells 
K10849 ERCC1; DNA excision repair protein ERCC-1 
K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] 
K10846 ERCC5; DNA excision repair protein ERCC-5 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K03869 CUL3; cullin 3 
K10612 CUL5; cullin 5 
K03872 ELOC; elongin-C 
K15076 ELOA; elongin-A 
K15076 ELOA; elongin-A 
     MMR (mismatch excision repair)
       Mismatch and loop recognition factors
       MutS homologs specialized for meiosis
       MutL homologs
       DNA polymerase delta complex
       RPA (replication factor A)
       RFC (replication factor C)
       Other MMR factors
         102463110 PCNA; proliferating cell nuclear antigen
         102462984 EXO1; exonuclease 1
         102454149 HMGB1; high mobility group protein B1
         102443770 LIG1; DNA ligase 1
K04802 PCNA; proliferating cell nuclear antigen 
K10746 EXO1; exonuclease 1 [EC:3.1.-.-] 
K10802 HMGB1; high mobility group protein B1 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
   DSBR (double strand breaks repair)
   TLS (translesion DNA synthesis) factors
   Check point factors
   Other factors with a suspected DNA repair function
 
 Prokaryotic Type

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Last updated: June 5, 2019