KEGG Orthology (KO) - Roseobacter litoralis

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:rli03030]
     03410 Base excision repair [PATH:rli03410]
       RLO149_c044570 mutM; formamidopyrimidine-DNA glycosylase MutM
       RLO149_c001740 nth; endonuclease III
       RLO149_c024030 HhH-GPD superfamily base excision DNA repair protein
       RLO149_c027500 tag; DNA-3-methyladenine glycosylase 1
       RLO149_c000090 uracil DNA glycosylase-like protein
       RLO149_c027830 uracil DNA glycosylase family protein
       RLO149_c024320 ung; uracil-DNA glycosylase Ung
       RLO149_c042880 mutY; A/G-specific adenine glycosylase MutY
       RLO149_c023980 putative exodeoxyribonuclease III
       RLO149_c039300 putative exodeoxyribonuclease III
       RLO149_c042470 polA; DNA polymerase I
       RLO149_c020170 putative single-stranded-DNA-specific exonuclease
       RLO149_c019560 ligA; DNA ligase LigA
       RLO149_c029030 putative ATP-dependent DNA ligase
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
     03420 Nucleotide excision repair [PATH:rli03420]
     03430 Mismatch repair [PATH:rli03430]
     03440 Homologous recombination [PATH:rli03440]
     03450 Non-homologous end-joining
     03460 Fanconi anemia pathway
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:rli03000]
     03021 Transcription machinery [BR:rli03021]
     03019 Messenger RNA biogenesis [BR:rli03019]
     03041 Spliceosome
     03011 Ribosome [BR:rli03011]
     03009 Ribosome biogenesis [BR:rli03009]
     03016 Transfer RNA biogenesis [BR:rli03016]
     03012 Translation factors [BR:rli03012]
     03110 Chaperones and folding catalysts [BR:rli03110]
     04131 Membrane trafficking [BR:rli04131]
     04121 Ubiquitin system
     03051 Proteasome [BR:rli03051]
     03032 DNA replication proteins [BR:rli03032]
     03036 Chromosome and associated proteins [BR:rli03036]
     03400 DNA repair and recombination proteins [BR:rli03400]
       RLO149_c012180 putative methylated-DNA--protein-cysteine methyltransferase
       RLO149_c022300 phrB; deoxyribodipyrimidine photo-lyase PhrB
       RLO149_c015820 hypothetical protein
       RLO149_c024320 ung; uracil-DNA glycosylase Ung
       RLO149_c042880 mutY; A/G-specific adenine glycosylase MutY
       RLO149_c001740 nth; endonuclease III
       RLO149_c029030 putative ATP-dependent DNA ligase
       RLO149_c041880 putative NUDIX hydrolase
       RLO149_c042120 putative mutator MutT protein
       RLO149_c027170 putative NUDIX hydrolase
       RLO149_c035790 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
       RLO149_c001750 putative HTH-type transcriptional regulator
       RLO149_c042200 alkB; putative alpha-ketoglutarate-dependent dioxygenase AlkB
       RLO149_c000090 uracil DNA glycosylase-like protein
       RLO149_c027830 uracil DNA glycosylase family protein
       RLO149_c024030 HhH-GPD superfamily base excision DNA repair protein
       RLO149_c027500 tag; DNA-3-methyladenine glycosylase 1
       RLO149_c044570 mutM; formamidopyrimidine-DNA glycosylase MutM
       RLO149_c023980 putative exodeoxyribonuclease III
       RLO149_c039300 putative exodeoxyribonuclease III
       RLO149_c020170 putative single-stranded-DNA-specific exonuclease
       RLO149_c019560 ligA; DNA ligase LigA
       RLO149_c042470 polA; DNA polymerase I
       RLO149_c014370 uvrA; uvrABC system protein A
       RLO149_c035280 uvrB; UvrABC system protein B
       RLO149_c003840 uvrC; UvrABC system protein C
       RLO149_c018720 DNA helicase-like protein
       RLO149_c025850 pcrA; ATP-dependent DNA helicase PcrA
       RLO149_c004220 rpoB; DNA-directed RNA polymerase subunit beta
       RLO149_c004230 rpoC; DNA-directed RNA polymerase subunit beta'
       RLO149_c033440 rpoA; DNA-directed RNA polymerase subunit alpha
       RLO149_c034270 rpoZ; DNA-directed RNA polymerase subunit omega
       RLO149_c018080 mfd; transcription-repair-coupling factor Mfd
       RLO149_c041780 mutS; DNA mismatch repair protein MutS
       RLO149_c038770 mutL; DNA mismatch repair protein MutL
       RLO149_c010260 xseA; exodeoxyribonuclease 7 large subunit XseA
       RLO149_c040570 xseB; exodeoxyribonuclease 7 small subunit XseB
       RLO149_c004050 dnaE1; DNA polymerase III subunit alpha
       RLO149_c000020 dnaN; DNA polymerase III subunit beta
       RLO149_c023460 putative DNA polymerase III chi subunit
       RLO149_c039410 hypothetical protein
       RLO149_c026640 DNA polymerase III delta subunit
       RLO149_c003060 putative exonuclease
       RLO149_c022730 exonuclease-like protein
       RLO149_c041620 dnaQ; DNA polymerase III subunit epsilon
       RLO149_c002500 dnaX; DNA polymerase III subunit tau
       RLO149_c019790 single-stranded DNA-binding protein (SSB)
       RLO149_c010220 hypothetical protein
       RLO149_c028180 vsr; very short patch repair protein Vsr
       RLO149_c018400 recA; protein RecA
       RLO149_c012330 ruvA; holliday junction ATP-dependent DNA helicase RuvA
       RLO149_c012340 ruvB; holliday junction ATP-dependent DNA helicase RuvB
       RLO149_c012320 ruvC; crossover junction endodeoxyribonuclease RuvC
       RLO149_c012250 priA; primosomal protein N'
       RLO149_c024640 radA; DNA repair protein RadA
       RLO149_c000030 recF; DNA replication and repair protein RecF
       RLO149_c019550 recG; ATP-dependent DNA helicase RecG
       RLO149_c034170 recO; putative DNA repair protein RecO
       RLO149_c002480 recR; recombination protein RecR
       RLO149_c025610 recN; DNA repair protein RecN
       RLO149_c041510 addA; double-strand break repair helicase AddA
       RLO149_c018270 gyrA; DNA gyrase subunit A
       RLO149_c000050 gyrB; DNA gyrase subunit B
       RLO149_c001320 putative phage integrase
       RLO149_c012690 topA; DNA topoisomerase 1
       RLO149_c000670 hup; DNA-binding protein HU
       RLO149_c023850 ihfA; integration host factor subunit alpha
       RLO149_c005220 ihfB; integration host factor subunit beta
       RLO149_c042380 recQ; ATP-dependent DNA helicase RecQ
       RLO149_c032100 putative ATP-dependent DNA helicase
       RLO149_c038270 dinB; DNA polymerase IV
       RLO149_c024360 lexA; repressor LexA
       RLO149_c020410 hypothetical protein
       RLO149_c042690 imuB; putative protein ImuB
       RLO149_c042500 dnaE2; DNA polymerase III subunit alpha
       RLO149_c012510 putative DEAD/DEAH box helicase
       RLO149_c004110 putative vitamin B12-dependent ribonucleoside-diphosphate reductase
       RLO149_c024150 nrdJ; vitamin B12-dependent ribonucleotide reductase NrdJ
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phrB; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K01669 phrB; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:3.1.-.- 3.6.4.12]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
     03029 Mitochondrial biogenesis [BR:rli03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: June 4, 2020