KEGG Orthology (KO) - Roseovarius sp. THAF27

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:roh03030]
     03410 Base excision repair [PATH:roh03410]
     03420 Nucleotide excision repair [PATH:roh03420]
     03430 Mismatch repair [PATH:roh03430]
     03440 Homologous recombination [PATH:roh03440]
     03450 Non-homologous end-joining [PATH:roh03450]
       FIU89_09570 ykoV; putative DNA repair protein YkoV
       FIU89_09575 Putative DNA ligase-like protein
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
     03460 Fanconi anemia pathway
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:roh03000]
     03021 Transcription machinery [BR:roh03021]
     03019 Messenger RNA biogenesis [BR:roh03019]
     03041 Spliceosome
     03011 Ribosome [BR:roh03011]
     03009 Ribosome biogenesis [BR:roh03009]
     03016 Transfer RNA biogenesis [BR:roh03016]
     03012 Translation factors [BR:roh03012]
     03110 Chaperones and folding catalysts [BR:roh03110]
     04131 Membrane trafficking [BR:roh04131]
     04121 Ubiquitin system
     03051 Proteasome
     03032 DNA replication proteins [BR:roh03032]
     03036 Chromosome and associated proteins [BR:roh03036]
     03400 DNA repair and recombination proteins [BR:roh03400]
       FIU89_04130 ogt; Methylated-DNA--protein-cysteine methyltransferase
       FIU89_09230 phrA; Deoxyribodipyrimidine photo-lyase
       FIU89_17590 phr; Deoxyribodipyrimidine photo-lyase
       FIU89_01005 mutY; A/G-specific adenine glycosylase
       FIU89_00685 nth; Endonuclease III
       FIU89_06370 ykoU; putative ATP-dependent DNA ligase YkoU
       FIU89_05080 RNA pyrophosphohydrolase
       FIU89_19055 NUDIX domain protein
       FIU89_20480 RNA pyrophosphohydrolase
       FIU89_20585 nudG; CTP pyrophosphohydrolase
       FIU89_12035 Bifunctional NMN adenylyltransferase/Nudix hydrolase
       FIU89_18425 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase
       FIU89_00690 ada; Bifunctional transcriptional activator/DNA repair enzyme Ada
       FIU89_20630 alkB3; Alpha-ketoglutarate-dependent dioxygenase AlkB
       FIU89_02510 Uracil DNA glycosylase superfamily protein
       FIU89_11535 Uracil DNA glycosylase superfamily protein
       FIU89_08190 alkA; DNA-3-methyladenine glycosylase 2
       FIU89_18295 tag; DNA-3-methyladenine glycosylase 1
       FIU89_20885 mutM; Formamidopyrimidine-DNA glycosylase
       FIU89_10640 xthA1; Exodeoxyribonuclease III
       FIU89_12685 xthA2; Exodeoxyribonuclease III
       FIU89_14655 recJ; Single-stranded-DNA-specific exonuclease RecJ
       FIU89_09845 ligA; DNA ligase
       FIU89_00635 polA; DNA polymerase I
       FIU89_11700 uvrA; UvrABC system protein A
       FIU89_07185 uvrB; UvrABC system protein B
       FIU89_19490 uvrC; UvrABC system protein C
       FIU89_06630 uvrD; DNA helicase II
       FIU89_16545 rpoB; DNA-directed RNA polymerase subunit beta
       FIU89_16540 rpoC; DNA-directed RNA polymerase subunit beta'
       FIU89_16145 rpoA; DNA-directed RNA polymerase subunit alpha
       FIU89_17690 rpoZ; DNA-directed RNA polymerase subunit omega
       FIU89_10455 mfd; Transcription-repair-coupling factor
       FIU89_20435 mutS; DNA mismatch repair protein MutS
       FIU89_18325 mutL; DNA mismatch repair protein MutL
       FIU89_06760 xseA; Exodeoxyribonuclease 7 large subunit
       FIU89_10060 xseB; Exodeoxyribonuclease 7 small subunit
       FIU89_05525 dnaE1; DNA polymerase III subunit alpha
       FIU89_00010 dnaN; DNA polymerase III subunit beta
       FIU89_08565 DNA polymerase III subunit chi
       FIU89_16495 DNA polymerase III subunit delta
       FIU89_13500 dnaX2; DNA polymerase III subunit tau
       FIU89_07355 polC; DNA polymerase III PolC-type
       FIU89_20355 dnaQ; DNA polymerase III subunit epsilon
       FIU89_02070 dnaX1; DNA polymerase III subunit tau
       FIU89_09665 ssb; Single-stranded DNA-binding protein
       FIU89_09610 recombinase A
       FIU89_04200 ruvA; Holliday junction ATP-dependent DNA helicase RuvA
       FIU89_04205 ruvB; Holliday junction ATP-dependent DNA helicase RuvB
       FIU89_04195 ruvC; Crossover junction endodeoxyribonuclease RuvC
       FIU89_04165 priA; Primosomal protein N'
       FIU89_11895 hypothetical protein
       FIU89_00015 recF; DNA replication and repair protein RecF
       FIU89_09850 recG; ATP-dependent DNA helicase RecG
       FIU89_16875 recO; DNA repair protein RecO
       FIU89_01980 recR; Recombination protein RecR
       FIU89_12495 recN; DNA repair protein RecN
       FIU89_20290 addA; ATP-dependent helicase/nuclease subunit A
       FIU89_20285 PD-(D/E)XK nuclease superfamily protein
       FIU89_09570 ykoV; putative DNA repair protein YkoV
       FIU89_09575 Putative DNA ligase-like protein
       FIU89_10490 gyrA; DNA gyrase subunit A
       FIU89_00020 gyrB; DNA gyrase subunit B
       FIU89_05650 Eukaryotic DNA topoisomerase I
       FIU89_04380 topA; DNA topoisomerase 1
       FIU89_01460 hupA; DNA-binding protein HU 1
       FIU89_10560 ihfA; Integration host factor subunit alpha
       FIU89_03355 ihfB; Integration host factor subunit beta
       FIU89_19580 recQ2; ATP-dependent DNA helicase RecQ
       FIU89_07680 stpA; DNA-binding protein StpA
       FIU89_19060 dinB; DNA polymerase IV
       FIU89_08745 lexA; LexA repressor
       FIU89_05965 hypothetical protein
       FIU89_18650 DNA polymerase IV
       FIU89_18400 dnaE3; Error-prone DNA polymerase
       FIU89_04305 recQ1; ATP-dependent DNA helicase RecQ
       FIU89_04695 nrdZ; Ribonucleoside-diphosphate reductase NrdZ
       FIU89_08835 nrdJ; Vitamin B12-dependent ribonucleotide reductase
       FIU89_05250 nrdE2; Ribonucleoside-diphosphate reductase subunit alpha 2
       FIU89_05255 nrdF2; Ribonucleoside-diphosphate reductase subunit beta nrdF2
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phrB; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K01669 phrB; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:3.1.-.- 3.6.4.12]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:3.1.-.- 3.6.4.12]
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
     03029 Mitochondrial biogenesis [BR:roh03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: September 22, 2020