KEGG Orthology (KO) - Rhodococcus opacus B4

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:rop03030]
     03410 Base excision repair [PATH:rop03410]
     03420 Nucleotide excision repair [PATH:rop03420]
     03430 Mismatch repair [PATH:rop03430]
     03440 Homologous recombination [PATH:rop03440]
     03450 Non-homologous end-joining [PATH:rop03450]
       ROP_69900 DNA end-binding protein Ku
       ROP_51120 ligD; ATP-dependent DNA ligase LigD
       ROP_pROB01-05350 putative ATP-dependent DNA ligase
       ROP_00440 hypothetical protein
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
     03460 Fanconi anemia pathway
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:rop03000]
     03021 Transcription machinery [BR:rop03021]
     03019 Messenger RNA biogenesis [BR:rop03019]
     03041 Spliceosome
     03011 Ribosome [BR:rop03011]
     03009 Ribosome biogenesis [BR:rop03009]
     03016 Transfer RNA biogenesis [BR:rop03016]
     03012 Translation factors [BR:rop03012]
     03110 Chaperones and folding catalysts [BR:rop03110]
     04131 Membrane trafficking [BR:rop04131]
     04121 Ubiquitin system [BR:rop04121]
     03051 Proteasome [BR:rop03051]
     03032 DNA replication proteins [BR:rop03032]
     03036 Chromosome and associated proteins [BR:rop03036]
     03400 DNA repair and recombination proteins [BR:rop03400]
       ROP_20470 putative methylated-DNA--protein-cysteine methyltransferase
       ROP_20490 ogt; methylated-DNA--protein-cysteine methyltransferase
       ROP_56230 putative methylated-DNA--protein-cysteine methyltransferase
       ROP_50630 phr; deoxyribodipyrimidine photo-lyase
       ROP_65630 ung; uracil-DNA glycosylase
       ROP_06740 putative 3-methyladenine DNA glycosylase
       ROP_43650 mutY; putative adenine glycosylase
       ROP_42330 nth; putative endonuclease III
       ROP_13440 ligB; ATP-dependent DNA ligase LigB
       ROP_50180 putative ATP-dependent DNA helicase
       ROP_15940 hydrolase
       ROP_59920 NTP pyrophosphohydrolase
       ROP_pROB01-04490 hypothetical protein
       ROP_19070 hypothetical protein
       ROP_07640 hypothetical protein
       ROP_68140 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase
       ROP_59560 mug; G/U mismatch-specific DNA glycosylase
       ROP_38680 putative uracil-DNA glycosylase
       ROP_60020 putative uracil-DNA glycosylase
       ROP_20450 alkA; 3-methyladenine-DNA glycosylase II
       ROP_60310 tag; 3-methyladenine-DNA glycosylase I
       ROP_19600 putative DNA glycosylase
       ROP_65750 mutM; formamidopyrimidine-DNA glycosylase/AP lyase
       ROP_10910 putative DNA glycosylase
       ROP_63310 putative DNA glycosylase
       ROP_18940 xthA; putative exodeoxyribonuclease III
       ROP_04150 putative exodeoxyribonuclease
       ROP_62990 exoA; exodeoxyribonuclease
       ROP_15710 nfo; putative endonuclease IV
       ROP_65220 ligA; NAD(+)-dependent DNA ligase
       ROP_20430 putative DNA polymerase
       ROP_07190 polA; DNA polymerase I
       ROP_04800 UvrA-like protein
       ROP_06990 uvrA; UvrABC system protein A
       ROP_07050 uvrB; UvrABC system protein B
       ROP_69540 uvrC; UvrABC system protein C
       ROP_64430 uvrD2; ATP-dependent DNA helicase UvrD2
       ROP_56390 uvrD1; ATP-dependent DNA helicase UvrD1
       ROP_64380 putative ATP-dependent DNA helicase
       ROP_16400 rpoB; DNA-directed RNA polymerase beta subunit
       ROP_16390 rpoC; DNA-directed RNA polymerase beta' subunit
       ROP_62150 rpoA; DNA-directed RNA polymerase alpha subunit
       ROP_69370 rpoZ; DNA-directed RNA polymerase omega subunit
       ROP_58240 mfd; transcription-repair coupling factor
       ROP_59300 xseA; exodeoxyribonuclease VII large subunit
       ROP_59290 xseB; exodeoxyribonuclease VII small subunit
       ROP_07970 dnaE; DNA polymerase III alpha subunit
       ROP_34840 dnaN; DNA polymerase III beta subunit
       ROP_10060 holA; putative DNA polymerase III delta subunit
       ROP_42640 holB; DNA polymerase III delta' subunit
       ROP_08540 dnaQ; putative DNA polymerase III epsilon subunit
       ROP_51650 putative exonuclease
       ROP_pROB01-05280 putative exonuclease
       ROP_pROB01-00770 hypothetical protein
       ROP_41260 dnaX; DNA polymerase III gamma/tau subunit
       ROP_11100 ssb; single-stranded DNA-binding protein
       ROP_32240 ssb; single-stranded DNA-binding protein
       ROP_40800 vsr; putative DNA mismatch endonuclease
       ROP_pROB02-00090 vsr; putative DNA mismatch endonuclease
       ROP_15190 recB; exodeoxyribonuclease V beta chain
       ROP_15200 recC; exodeoxyribonuclease V gamma chain
       ROP_15180 recD; exodeoxyribonuclease V alpha chain
       ROP_67510 recA; RecA protein
       ROP_68720 ruvA; Holliday junction DNA helicase RuvA
       ROP_68730 ruvB; Holliday junction DNA helicase RuvB
       ROP_68710 ruvC; Holliday junction endonuclease RuvC
       ROP_69400 priA; primosomal protein n'
       ROP_59350 sbcC; nuclease SbcCD subunit C
       ROP_59340 sbcD; nuclease SbcCD subunit D
       ROP_43750 radA; DNA repair protein RadA
       ROP_34860 recF; DNA replication and repair protein RecF
       ROP_65670 recG; ATP-dependent DNA helicase RecG
       ROP_09460 recO; DNA repair protein RecO
       ROP_41380 recR; recombination protein RecR
       ROP_06670 recN; DNA repair protein RecN
       ROP_69900 DNA end-binding protein Ku
       ROP_51120 ligD; ATP-dependent DNA ligase LigD
       ROP_pROB01-05350 putative ATP-dependent DNA ligase
       ROP_00440 hypothetical protein
       ROP_34970 gyrA; DNA gyrase subunit A
       ROP_34910 gyrB; DNA gyrase subunit B
       ROP_42630 topA; DNA topoisomerase I
       ROP_65520 hup; putative DNA-binding protein HU
       ROP_10260 putative ATP-dependent DNA helicase
       ROP_10970 dinB; DNA polymerase IV
       ROP_13990 dinB; DNA polymerase IV
       ROP_08050 dinB; DNA polymerase IV
       ROP_67740 lexA; LexA repressor
       ROP_31520 lexA; LexA repressor
       ROP_62730 hypothetical protein
       ROP_62860 dnaE2; error-prone DNA polymerase
       ROP_67520 recX; regulatory protein RecX
       ROP_11530 putative ATP-dependent DNA helicase
       ROP_63320 putative ATP-dependent helicase
       ROP_65530 mutT; NTP pyrophosphohydrolase MutT
       ROP_02400 hypothetical protein
       ROP_06630 nudF; putative ADP-ribose pyrophosphatase
       ROP_64940 nrdE; ribonucleoside-diphosphate reductase alpha chain
       ROP_64950 nrdF; ribonucleoside-diphosphate reductase beta chain
       ROP_62760 hypothetical protein
       ROP_pROB01-04060 hypothetical protein
       ROP_66860 DHH family protein
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phrB; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:3.6.4.12]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:3.6.4.12]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
     03029 Mitochondrial biogenesis [BR:rop03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: September 22, 2020