KEGG Orthology (KO) - Rhodococcus rhodochrous

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:rrt03030]
     03410 Base excision repair [PATH:rrt03410]
     03420 Nucleotide excision repair [PATH:rrt03420]
     03430 Mismatch repair [PATH:rrt03430]
     03440 Homologous recombination [PATH:rrt03440]
     03450 Non-homologous end-joining [PATH:rrt03450]
       4535765_02240 DNA end-binding protein Ku
       4535765_00993 ATP-dependent DNA ligase
       4535765_02469 ATP-dependent DNA ligase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
     03460 Fanconi anemia pathway
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:rrt03000]
     03021 Transcription machinery [BR:rrt03021]
     03019 Messenger RNA biogenesis [BR:rrt03019]
     03041 Spliceosome
     03011 Ribosome [BR:rrt03011]
     03009 Ribosome biogenesis [BR:rrt03009]
     03016 Transfer RNA biogenesis [BR:rrt03016]
     03012 Translation factors [BR:rrt03012]
     03110 Chaperones and folding catalysts [BR:rrt03110]
     04131 Membrane trafficking [BR:rrt04131]
     04121 Ubiquitin system [BR:rrt04121]
     03051 Proteasome [BR:rrt03051]
     03032 DNA replication proteins [BR:rrt03032]
     03036 Chromosome and associated proteins [BR:rrt03036]
     03400 DNA repair and recombination proteins [BR:rrt03400]
       4535765_04500 ogt_1; methylated-DNA-[protein]-cysteine s-methyltransferase
       4535765_04502 ogt_2; methylated-DNA--protein-cysteine methyltransferase
       4535765_00102 phrA; deoxyribodipyrimidine photolyase
       4535765_01881 ung; uracil-DNA glycosylase
       4535765_02767 3-methyladenine DNA glycosylase
       4535765_00539 mutY; A/G-specific adenine glycosylase
       4535765_00463 nth; endonuclease III
       4535765_01870 ligB; ATP-dependent DNA ligase
       4535765_00898 DNA repair helicase
       4535765_01318 nudG_1; NTP pyrophosphohydrolase
       4535765_00174 nudix superfamily hydrolase
       4535765_03870 nudix superfamily hydrolase
       4535765_02074 dut; dUTP diphosphatase
       4535765_00733 alkB_1; alkylated DNA repair protein
       4535765_01309 mug; G/U mismatch-specific DNA glycosylase
       4535765_00122 uracil-DNA glycosylase
       4535765_01325 uracil-DNA glycosylase
       4535765_04499 alkA; DNA-3-methyladenine glycosylase ii
       4535765_01345 tag; DNA-3-methyladenine glycosylase i
       4535765_01024 mutM_1; DNA-formamidopyrimidine glycosylase
       4535765_01893 mutM_3; formamidopyrimidine-DNA glycosylase
       4535765_01811 mutM_2; DNA-formamidopyrimidine glycosylase
       4535765_03398 nei; DNA-formamidopyrimidine glycosylase
       4535765_03427 exoA; exodeoxyribonuclease III
       4535765_03457 xthA_1; exodeoxyribonuclease
       4535765_03859 xthA_2; exodeoxyribonuclease III
       4535765_01413 nfo; endonuclease IV
       4535765_03189 ligA; NAD(+)-dependent DNA ligase
       4535765_04498 polA_3; DNA-directed DNA polymerase
       4535765_02828 polA_2; DNA polymerase I
       4535765_02790 uvrA; excinuclease ABC subunit A
       4535765_02799 uvrB; excinuclease ABC subunit b uvrb
       4535765_02204 uvrC; excinuclease ABC subunit C
       4535765_01036 pcrA_1; ATP-dependent DNA helicase UvrD1
       4535765_03289 pcrA_2; UvrD/REP helicase
       4535765_03295 pcrA_3; UvrD/REP helicase
       4535765_03617 rpoB; DNA-directed RNA polymerase subunit beta
       4535765_03616 rpoC; DNA-directed RNA polymerase beta subunit rpoc
       4535765_03507 rpoA; DNA-directed RNA polymerase alpha subunit rpoa
       4535765_02188 rpoZ; DNA-directed RNA polymerase omega subunit rpoz
       4535765_01129 mfd; transcription repair coupling factor mfd
       4535765_01187 xseA; exodeoxyribonuclease VII large subunit
       4535765_01186 exodeoxyribonuclease VII small subunit
       4535765_02949 dnaE1; DNA polymerase III alpha subunit dnae1
       4535765_00014 dnaN; DNA polymerase III beta subunit
       4535765_03132 DNA polymerase III delta subunit
       4535765_00491 dnaX_3; DNA polymerase III delta' subunit
       4535765_01477 polC_1; DNA polymerase III
       4535765_04419 polC_3; DNA polymerase III epsilon subunit
       4535765_03004 polC_2; DNA polymerase III epsilon subunit
       4535765_00355 dnaX_1; DNA polymerase III gamma subunit
       4535765_00390 dnaX_2; DNA polymerase III gamma subunit
       4535765_04831 ssb; single-strand binding protein
       4535765_00286 vsr_1; DNA mismatch endonuclease vsr
       4535765_01522 vsr_2; putative DNA mismatch endonuclease
       4535765_01227 recB; exodeoxyribonuclease V subunit beta
       4535765_01226 recC; exodeoxyribonuclease V gamma chain
       4535765_01228 recD; exodeoxyribonuclease V alpha chain
       4535765_02017 recA; recombinase A
       4535765_02126 ruvA; Holliday junction DNA helicase RuvA
       4535765_02127 ruvB; holliday junction DNA helicase ruvb
       4535765_02125 ruvC; crossover junction endodeoxyribonuclease ruvc
       4535765_02191 priA; primosome assembly protein PriA
       4535765_01193 sbcC; ATP-dependent dsDNA exonuclease SbcC
       4535765_01192 sbcD; exonuclease SbcD
       4535765_00546 radA; DNA repair protein RadA
       4535765_00015 recF; DNA replication and repair protein recf
       4535765_01885 recG; ATP-dependent DNA helicase RecG
       4535765_03095 recO; DNA repair protein reco
       4535765_00414 recR; recombination protein RecR
       4535765_02757 recN; DNA repair protein recn
       4535765_02240 DNA end-binding protein Ku
       4535765_00993 ATP-dependent DNA ligase
       4535765_02469 ATP-dependent DNA ligase
       4535765_00025 gyrA; DNA gyrase subunit A
       4535765_00017 gyrB; DNA gyrase subunit B
       4535765_00488 topA; DNA topoisomerase I subunit omega
       4535765_03149 hupB; histone-like bacterial DNA-binding protein hupb
       4535765_02151 recQ_2; ATP-dependent DNA helicase RecQ
       4535765_01876 recQ_1; putative ATP-dependent DNA helicase
       4535765_00544 dinB_1; DNA polymerase IV
       4535765_00545 dinB_2; DNA-directed DNA polymerase
       4535765_01587 umuC; DNA polymerase IV
       4535765_02956 dinB_3; DNA polymerase iv
       4535765_02038 lexA_1; LexA repressor
       4535765_02837 lexA_2; LexA repressor
       4535765_03459 DNA-directed DNA polymerase
       4535765_03446 dnaE2; error-prone DNA polymerase
       4535765_02018 recX; recombination regulator RecX
       4535765_01722 dinG; ATP-dependent DNA helicase
       4535765_03397 dead/deah box helicase
       4535765_03148 nudG_2; MutT family hydrolase
       4535765_02753 nudF; ADP-ribose pyrophosphatase
       4535765_03218 nrdE2; ribonucleotide-diphosphate reductase subunit alpha
       4535765_03887 nrdE; ribonucleotide-diphosphate reductase subunit alpha
       4535765_00037 ribonucleotide-diphosphate reductase subunit beta
       4535765_03217 nrdF; ribonucleoside-diphosphate reductase nrdf
       4535765_01972 nrnA; phosphoesterase
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phrB; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:3.6.4.12]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:3.6.4.12]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
     03029 Mitochondrial biogenesis [BR:rrt03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: September 21, 2020