KEGG Orthology (KO) - Salicibibacter kimchii

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:rue03030]
     03410 Base excision repair [PATH:rue03410]
       DT065_07460 mutM; DNA-formamidopyrimidine glycosylase
       DT065_02035 nth; endonuclease III
       DT065_12175 DNA-3-methyladenine glycosylase 2 family protein
       DT065_10280 uracil-DNA glycosylase
       DT065_10785 uracil-DNA glycosylase
       DT065_17730 mutY; A/G-specific adenine glycosylase
       DT065_02515 DNA-3-methyladenine glycosylase
       DT065_00850 deoxyribonuclease IV
       DT065_07465 DNA polymerase I
       DT065_18445 recJ; single-stranded-DNA-specific exonuclease RecJ
       DT065_17160 NAD-dependent DNA ligase LigA
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
     03420 Nucleotide excision repair [PATH:rue03420]
     03430 Mismatch repair [PATH:rue03430]
     03440 Homologous recombination [PATH:rue03440]
     03450 Non-homologous end-joining [PATH:rue03450]
     03460 Fanconi anemia pathway
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:rue03000]
     03021 Transcription machinery [BR:rue03021]
     03019 Messenger RNA biogenesis [BR:rue03019]
     03041 Spliceosome
     03011 Ribosome [BR:rue03011]
     03009 Ribosome biogenesis [BR:rue03009]
     03016 Transfer RNA biogenesis [BR:rue03016]
     03012 Translation factors [BR:rue03012]
     03110 Chaperones and folding catalysts [BR:rue03110]
     04131 Membrane trafficking [BR:rue04131]
     04121 Ubiquitin system
     03051 Proteasome [BR:rue03051]
     03032 DNA replication proteins [BR:rue03032]
     03036 Chromosome and associated proteins [BR:rue03036]
     03400 DNA repair and recombination proteins [BR:rue03400]
       DT065_16610 methylated-DNA--[protein]-cysteine S-methyltransferase
       DT065_17890 methylated-DNA--[protein]-cysteine S-methyltransferase
       DT065_10785 uracil-DNA glycosylase
       DT065_02515 DNA-3-methyladenine glycosylase
       DT065_17730 mutY; A/G-specific adenine glycosylase
       DT065_02035 nth; endonuclease III
       DT065_08665 ytkD; nucleoside triphosphatase YtkD
       DT065_09730 8-oxo-dGTP diphosphatase
       DT065_14965 (deoxy)nucleoside triphosphate pyrophosphohydrolase
       DT065_17870 deoxyuridine 5'-triphosphate nucleotidohydrolase
       DT065_17965 helix-turn-helix domain-containing protein
       DT065_16600 helix-turn-helix domain-containing protein
       DT065_10280 uracil-DNA glycosylase
       DT065_12175 DNA-3-methyladenine glycosylase 2 family protein
       DT065_07460 mutM; DNA-formamidopyrimidine glycosylase
       DT065_00850 deoxyribonuclease IV
       DT065_18445 recJ; single-stranded-DNA-specific exonuclease RecJ
       DT065_17160 NAD-dependent DNA ligase LigA
       DT065_07465 DNA polymerase I
       DT065_09840 excinuclease ABC subunit UvrA
       DT065_09845 excinuclease ABC subunit UvrB
       DT065_07190 excinuclease ABC subunit UvrC
       DT065_14480 helicase
       DT065_17155 pcrA; DNA helicase PcrA
       DT065_04220 ATP-dependent helicase
       DT065_11885 rpoB; DNA-directed RNA polymerase subunit beta
       DT065_11890 rpoC; DNA-directed RNA polymerase subunit beta'
       DT065_12055 DNA-directed RNA polymerase subunit alpha
       DT065_10490 rpoE; DNA-directed RNA polymerase subunit delta
       DT065_05005 DNA-directed RNA polymerase subunit omega
       DT065_11535 mfd; transcription-repair coupling factor
       DT065_02880 mutS; DNA mismatch repair protein MutS
       DT065_07220 endonuclease MutS2
       DT065_02875 DNA mismatch repair endonuclease MutL
       DT065_01330 exodeoxyribonuclease VII large subunit
       DT065_01335 xseB; exodeoxyribonuclease VII small subunit
       DT065_07855 DNA polymerase III subunit alpha
       DT065_03105 PolC-type DNA polymerase III
       DT065_11025 DNA polymerase III subunit beta
       DT065_00630 DNA polymerase III subunit delta
       DT065_11410 DNA polymerase III subunit delta'
       DT065_11350 DNA polymerase III subunit gamma/tau
       DT065_10905 ssb; single-stranded DNA-binding protein
       DT065_10025 ssb; single-stranded DNA-binding protein
       DT065_18525 ATP-dependent RecD-like DNA helicase
       DT065_02925 recA; recombinase RecA
       DT065_18375 Holliday junction branch migration protein RuvA
       DT065_18380 Holliday junction branch migration DNA helicase RuvB
       DT065_04970 primosomal protein N'
       DT065_02290 SMC family ATPase
       DT065_02285 exonuclease SbcCD subunit D
       DT065_11790 DNA repair protein RadA
       DT065_11035 DNA replication/repair protein RecF
       DT065_04905 ATP-dependent DNA helicase RecG
       DT065_00785 DNA repair protein RecO
       DT065_11360 recombination protein RecR
       DT065_01360 recN; DNA repair protein RecN
       DT065_00300 Holliday junction resolvase RecU
       DT065_02050 Holliday junction resolvase RecU
       DT065_02280 addA; helicase-exonuclease AddAB subunit AddA
       DT065_02275 addB; helicase-exonuclease AddAB subunit AddB
       DT065_14390 cas1b; type I-B CRISPR-associated endonuclease Cas1
       DT065_17625 Ku protein
       DT065_17620 ligD; DNA ligase D
       DT065_11050 DNA gyrase subunit A
       DT065_11045 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B
       DT065_03320 type I DNA topoisomerase
       DT065_15700 HU family DNA-binding protein
       DT065_00520 HU family DNA-binding protein
       DT065_02300 recQ; DNA helicase RecQ
       DT065_14485 DNA polymerase IV
       DT065_05755 DNA polymerase IV
       DT065_02710 transcriptional repressor LexA
       DT065_17710 recombination regulator RecX
       DT065_07225 DNA polymerase/3'-5' exonuclease PolX
       DT065_02010 ATP-dependent helicase DinG
       DT065_05905 DEAD/DEAH box helicase
       DT065_10580 ribonucleoside-diphosphate reductase subunit alpha
       DT065_10590 ribonucleotide-diphosphate reductase subunit beta
       DT065_15045 R2-like ligand-binding oxidase
       DT065_13230 R2-like ligand-binding oxidase
       DT065_07870 bifunctional oligoribonuclease/PAP phosphatase NrnA
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23]
K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03048 rpoE; DNA-directed RNA polymerase subunit delta
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03700 recU; recombination protein U
K03700 recU; recombination protein U
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:3.1.-.- 3.6.4.12]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:3.1.-.- 3.6.4.12]
K15342 cas1; CRISP-associated protein Cas1
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K02347 polX; DNA polymerase (family X)
K03722 dinG; ATP-dependent DNA helicase DinG [EC:3.6.4.12]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
     03029 Mitochondrial biogenesis [BR:rue03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: August 4, 2020