DNA Repair and Recombination Proteins - Seriola dumerili (greater amberjack)

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     KO
 Eukaryotic type
   SSBR (single strand breaks repair)
     Direct repair
     BER (base exicision repair)
       DNA glycosylases
       AP endonucleases
       Long Patch-BER factors
         DNA polymerase delta complex
         DNA polymerase epsilon complex
         111237758 pcna; proliferating cell nuclear antigen
K04802 PCNA; proliferating cell nuclear antigen 
         111228832 probable flap endonuclease 1 homolog
K04799 FEN1; flap endonuclease-1 [EC:3.-.-.-] 
         111239294 fen1; flap endonuclease 1
K04799 FEN1; flap endonuclease-1 [EC:3.-.-.-] 
         111239385 lig1; DNA ligase 1
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
       Short Patch-BER factors
       Other BER factors
     NER (nucleotide excision repair)
       GGR (global genome repair) factors
       TCR (transcription coupled repair) factors
       TFIIH complex
       RPA (replication factor A)
       Other NER factors
         111229354 xpa; DNA repair protein complementing XP-A cells
         111218218 ercc1; DNA excision repair protein ERCC-1 isoform X1
         111220144 ercc4; DNA repair endonuclease XPF
         111238341 ercc5; DNA repair protein complementing XP-G cells
         111239385 lig1; DNA ligase 1
         111219903 mms19; MMS19 nucleotide excision repair protein homolog
         111224075 cullin-3
         111228789 cullin-3-like isoform X1
         111216894 cullin-5-like
         111217143 cul5; cullin-5 isoform X1
         111220976 eloc; elongin-C
         111217678 elongin-B isoform X1
         111219957 elongin-B-like
         111220886 eloa; elongin-A
         111234262 elongin-A-like
K10847 XPA; DNA-repair protein complementing XP-A cells 
K10849 ERCC1; DNA excision repair protein ERCC-1 
K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] 
K10846 ERCC5; DNA excision repair protein ERCC-5 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K15075 MET18; DNA repair/transcription protein MET18/MMS19 
K03869 CUL3; cullin 3 
K03869 CUL3; cullin 3 
K10612 CUL5; cullin 5 
K10612 CUL5; cullin 5 
K03872 ELOC; elongin-C 
K03873 ELOB; elongin-B 
K03873 ELOB; elongin-B 
K15076 ELOA; elongin-A 
K15076 ELOA; elongin-A 
     MMR (mismatch excision repair)
       Mismatch and loop recognition factors
       MutS homologs specialized for meiosis
       MutL homologs
       DNA polymerase delta complex
       RPA (replication factor A)
       RFC (replication factor C)
       Other MMR factors
         111237758 pcna; proliferating cell nuclear antigen
         111236431 exo1; exonuclease 1
         111217084 hmgb1; high mobility group protein B1
         111224459 high mobility group protein B1-like
         111239385 lig1; DNA ligase 1
K04802 PCNA; proliferating cell nuclear antigen 
K10746 EXO1; exonuclease 1 [EC:3.1.-.-] 
K10802 HMGB1; high mobility group protein B1 
K10802 HMGB1; high mobility group protein B1 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
   DSBR (double strand breaks repair)
   TLS (translesion DNA synthesis) factors
   Check point factors
   Other factors with a suspected DNA repair function
 
 Prokaryotic type

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Last updated: September 9, 2019