DNA Repair and Recombination Proteins - Scleropages formosus (Asian bonytongue)

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     KO
 Eukaryotic Type
   SSBR (single strand breaks repair)
     Direct repair
     BER (base exicision repair)
       DNA glycosylases
       AP endonucleases
       Long Patch-BER factors
         DNA polymerase delta complex
         DNA polymerase epsilon complex
         108933423 proliferating cell nuclear antigen-like
K04802 PCNA; proliferating cell nuclear antigen 
         108940373 proliferating cell nuclear antigen
K04802 PCNA; proliferating cell nuclear antigen 
         108927667 fen1; flap endonuclease 1
K04799 FEN1; flap endonuclease-1 [EC:3.-.-.-] 
         108933391 probable flap endonuclease 1 homolog isoform X1
K04799 FEN1; flap endonuclease-1 [EC:3.-.-.-] 
         108937809 lig1; DNA ligase 1 isoform X1
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
       Short Patch-BER factors
       Other BER factors
     NER (nucleotide excision repair)
       GGR (global genome repair) factors
       TCR (transcription coupled repair) factors
       TFIIH complex
       RPA (replication factor A)
       Other NER factors
         108920859 xpa; DNA repair protein complementing XP-A cells
         108937446 ercc1; DNA excision repair protein ERCC-1
         108926581 ercc4; DNA repair endonuclease XPF
         108938406 ercc5; DNA repair protein complementing XP-G cells isoform X1
         108937809 lig1; DNA ligase 1 isoform X1
         108918901 mms19; MMS19 nucleotide excision repair protein homolog isoform X1
         108922485 cul3; cullin-3 isoform X1
         108924613 cul5; cullin-5
         108921284 cullin-5-like isoform X1
         108935425 transcription elongation factor B polypeptide 1
         108937646 tceb1; transcription elongation factor B polypeptide 1
         108919432 transcription elongation factor B polypeptide 2-like
         108941820 transcription elongation factor B polypeptide 2-like
         108931776 tceb3; transcription elongation factor B polypeptide 3 isoform X1
         108932810 transcription elongation factor B polypeptide 3-like
K10847 XPA; DNA-repair protein complementing XP-A cells 
K10849 ERCC1; DNA excision repair protein ERCC-1 
K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] 
K10846 ERCC5; DNA excision repair protein ERCC-5 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K15075 MET18; DNA repair/transcription protein MET18/MMS19 
K03869 CUL3; cullin 3 
K10612 CUL5; cullin 5 
K10612 CUL5; cullin 5 
K03872 ELOC; elongin-C 
K03872 ELOC; elongin-C 
K03873 ELOB; elongin-B 
K03873 ELOB; elongin-B 
K15076 ELOA; elongin-A 
K15076 ELOA; elongin-A 
     MMR (mismatch excision repair)
       Mismatch and loop recognition factors
       MutS homologs specialized for meiosis
       MutL homologs
       DNA polymerase delta complex
       RPA (replication factor A)
       RFC (replication factor C)
       Other MMR factors
         108933423 proliferating cell nuclear antigen-like
         108940373 proliferating cell nuclear antigen
         108942727 exo1; exonuclease 1
         108941749 high mobility group protein B1-like
         108941758 high mobility group protein B1-like isoform X1
         108936270 high mobility group protein B1-like
         108941932 high mobility group protein B1-like
         108937809 lig1; DNA ligase 1 isoform X1
K04802 PCNA; proliferating cell nuclear antigen 
K04802 PCNA; proliferating cell nuclear antigen 
K10746 EXO1; exonuclease 1 [EC:3.1.-.-] 
K10802 HMGB1; high mobility group protein B1 
K10802 HMGB1; high mobility group protein B1 
K10802 HMGB1; high mobility group protein B1 
K10802 HMGB1; high mobility group protein B1 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
   DSBR (double strand breaks repair)
   TLS (translesion DNA synthesis) factors
   Check point factors
   Other factors with a suspected DNA repair function
 
 Prokaryotic Type

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Last updated: June 5, 2019