KEGG Orthology (KO) - Sphingobacterium sp. 21

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:shg03030]
     03410 Base excision repair [PATH:shg03410]
     03420 Nucleotide excision repair [PATH:shg03420]
     03430 Mismatch repair [PATH:shg03430]
     03440 Homologous recombination [PATH:shg03440]
     03450 Non-homologous end-joining [PATH:shg03450]
       Sph21_3426 DNA repair protein
       Sph21_2578 DNA ligase D
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
     03460 Fanconi anemia pathway
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:shg03000]
     03021 Transcription machinery [BR:shg03021]
     03019 Messenger RNA biogenesis [BR:shg03019]
     03041 Spliceosome
     03011 Ribosome [BR:shg03011]
     03009 Ribosome biogenesis [BR:shg03009]
     03016 Transfer RNA biogenesis [BR:shg03016]
     03012 Translation factors [BR:shg03012]
     03110 Chaperones and folding catalysts [BR:shg03110]
     04131 Membrane trafficking [BR:shg04131]
     04121 Ubiquitin system [BR:shg04121]
     03051 Proteasome [BR:shg03051]
     03032 DNA replication proteins [BR:shg03032]
     03036 Chromosome and associated proteins [BR:shg03036]
     03400 DNA repair and recombination proteins [BR:shg03400]
       Sph21_1680 Deoxyribodipyrimidine photo-lyase
       Sph21_1683 cryptochrome
       Sph21_4011 Uracil-DNA glycosylase
       Sph21_2724 3-methyladenine DNA glycosylase
       Sph21_1130 A/G-specific adenine glycosylase
       Sph21_0570 endonuclease III
       Sph21_1108 ATP dependent DNA ligase
       Sph21_2716 NUDIX hydrolase
       Sph21_3895 NUDIX hydrolase
       Sph21_1028 NUDIX hydrolase
       Sph21_2933 NUDIX hydrolase
       Sph21_2363 NUDIX hydrolase
       Sph21_4272 methylated-DNA/protein-cysteine methyltransferase
       Sph21_2783 transcriptional regulator
       Sph21_5115 HhH-GPD family protein
       Sph21_4366 methyladenine glycosylase
       Sph21_4849 methyladenine glycosylase
       Sph21_1495 DNA-3-methyladenine glycosylase I
       Sph21_3236 DNA-formamidopyrimidine glycosylase
       Sph21_4521 exodeoxyribonuclease III Xth
       Sph21_1390 exodeoxyribonuclease III Xth
       Sph21_4105 Endonuclease V
       Sph21_0716 single-stranded-DNA-specific exonuclease RecJ
       Sph21_0048 DNA ligase
       Sph21_1518 DNA polymerase I
       Sph21_5270 excinuclease ABC
       Sph21_0558 excinuclease ABC
       Sph21_0721 UvrABC system protein B
       Sph21_5241 UvrABC system protein C
       Sph21_3839 UvrD/REP helicase
       Sph21_2931 UvrD/REP helicase
       Sph21_2406 DNA-directed RNA polymerase subunit beta
       Sph21_2407 DNA-directed RNA polymerase subunit beta'
       Sph21_1742 DNA-directed RNA polymerase subunit alpha
       Sph21_1343 transcription-repair coupling factor
       Sph21_3063 DNA mismatch repair protein mutS
       Sph21_5111 DNA mismatch repair protein MutS domain protein
       Sph21_4670 MutS2 protein
       Sph21_1476 DNA mismatch repair protein mutL
       Sph21_1456 Exonuclease VII
       Sph21_1455 Exodeoxyribonuclease 7 small subunit
       Sph21_3922 DNA polymerase III
       Sph21_1712 DNA polymerase III
       Sph21_2465 DNA polymerase III
       Sph21_0763 DNA polymerase III gamma/tau subunit
       Sph21_3055 Exonuclease RNase T and DNA polymerase III
       Sph21_3431 DNA polymerase III
       Sph21_2353 DNA polymerase III
       Sph21_4628 single-strand binding protein
       Sph21_5164 single-strand binding protein
       Sph21_1131 single-strand binding protein
       Sph21_0962 DNA mismatch endonuclease Vsr
       Sph21_0569 Protein recA
       Sph21_2087 Holliday junction ATP-dependent DNA helicase ruvA
       Sph21_2470 Holliday junction ATP-dependent DNA helicase ruvB
       Sph21_1573 Crossover junction endodeoxyribonuclease ruvC
       Sph21_0322 primosomal protein N'
       Sph21_3865 SMC domain protein
       Sph21_3866 nuclease SbcCD
       Sph21_1126 DNA repair protein RadA
       Sph21_5257 DNA replication and repair protein recF
       Sph21_1158 ATP-dependent DNA helicase RecG
       Sph21_0038 DNA repair protein recO
       Sph21_3097 Recombination protein recR
       Sph21_0396 DNA repair protein RecN
       Sph21_3426 DNA repair protein
       Sph21_2578 DNA ligase D
       Sph21_3360 DNA gyrase
       Sph21_2460 DNA gyrase
       Sph21_3683 DNA topoisomerase
       Sph21_3174 DNA topoisomerase I
       Sph21_2104 histone family protein DNA-binding protein
       Sph21_1129 histone family protein DNA-binding protein
       Sph21_2937 ATP-dependent DNA helicase
       Sph21_3364 ATP-dependent DNA helicase RecQ
       Sph21_3197 DNA polymerase IV
       Sph21_3429 DNA polymerase IV
       Sph21_3244 hypothetical protein
       Sph21_3245 cytosolic protein
       Sph21_4679 regulatory protein RecX
       Sph21_4023 PHP domain protein
       Sph21_1109 DEAD/H associated domain protein
       Sph21_2913 ribonucleoside-diphosphate reductase
       Sph21_0339 ribonucleoside-diphosphate reductase
       Sph21_2914 Ribonucleoside-diphosphate reductase
       Sph21_0340 Ribonucleoside-diphosphate reductase
       Sph21_1242 phosphoesterase RecJ domain protein
K01669 phrB; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K01669 phrB; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
K03555 mutS; DNA mismatch repair protein MutS
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K03565 recX; regulatory protein
K02347 polX; DNA polymerase (family X)
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
     03029 Mitochondrial biogenesis [BR:shg03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: September 19, 2020