09100 Metabolism
09120 Genetic Information Processing
09121 Transcription
09122 Translation
09123 Folding, sorting and degradation
09124 Replication and repair
03030 DNA replication [PATH:sinb03030]
03410 Base excision repair [PATH:sinb03410]
SIDU_05155 endonuclease III SIDU_12885 uracil-DNA glycosylase SIDU_15335 A/G-specific adenine glycosylase SIDU_09720 formamidopyrimidine-DNA glycosylase SIDU_09810 DNA glycosylase SIDU_15530 hypothetical protein SIDU_04410 uracil-DNA glycosylase SIDU_10490 DNA polymerase SIDU_05670 uracil-DNA glycosylase SIDU_01485 exodeoxyribonuclease III SIDU_15860 exodeoxyribonuclease III SIDU_13505 DNA polymerase I SIDU_13045 single-stranded-DNA-specific exonuclease RecJ SIDU_06470 aromatic ring-opening dioxygenase LigA
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K02335 polA; DNA polymerase I [EC:2.7.7.7] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
03420 Nucleotide excision repair [PATH:sinb03420]
03430 Mismatch repair [PATH:sinb03430]
03440 Homologous recombination [PATH:sinb03440]
03450 Non-homologous end-joining [PATH:sinb03450]
03460 Fanconi anemia pathway
09126 Chromosome
09125 Information processing in viruses
09130 Environmental Information Processing
09140 Cellular Processes
09150 Organismal Systems
09160 Human Diseases
09180 Brite Hierarchies
09181 Protein families: metabolism
09182 Protein families: genetic information processing
03000 Transcription factors [BR:sinb03000]
03021 Transcription machinery [BR:sinb03021]
03019 Messenger RNA biogenesis [BR:sinb03019]
03041 Spliceosome [BR:sinb03041]
03011 Ribosome [BR:sinb03011]
03009 Ribosome biogenesis [BR:sinb03009]
03016 Transfer RNA biogenesis [BR:sinb03016]
03012 Translation factors [BR:sinb03012]
03110 Chaperones and folding catalysts [BR:sinb03110]
04131 Membrane trafficking [BR:sinb04131]
04121 Ubiquitin system
03051 Proteasome [BR:sinb03051]
03032 DNA replication proteins [BR:sinb03032]
03036 Chromosome and associated proteins [BR:sinb03036]
03400 DNA repair and recombination proteins [BR:sinb03400]
SIDU_05140 cysteine methyltransferase SIDU_05570 deoxyribodipyrimidine photolyase SIDU_12885 uracil-DNA glycosylase SIDU_15335 A/G-specific adenine glycosylase SIDU_05155 endonuclease III SIDU_13685 S1/P1 Nuclease SIDU_13920 S1/P1 Nuclease SIDU_14985 NUDIX hydrolase SIDU_03030 NTP pyrophosphohydrolase SIDU_15840 deoxyuridine 5'-triphosphate nucleotidohydrolase SIDU_01430 6-O-methylguanine DNA methyltransferase SIDU_04410 uracil-DNA glycosylase SIDU_10490 DNA polymerase SIDU_05670 uracil-DNA glycosylase SIDU_09810 DNA glycosylase SIDU_15530 hypothetical protein SIDU_09720 formamidopyrimidine-DNA glycosylase SIDU_01485 exodeoxyribonuclease III SIDU_15860 exodeoxyribonuclease III SIDU_13045 single-stranded-DNA-specific exonuclease RecJ SIDU_06470 aromatic ring-opening dioxygenase LigA SIDU_13505 DNA polymerase I SIDU_08405 ABC-ATPase UvrA SIDU_13295 excinuclease ABC subunit B SIDU_04095 excinuclease ABC subunit C SIDU_04630 DNA helicase II SIDU_12025 DNA helicase II SIDU_09155 DNA-directed RNA polymerase subunit beta SIDU_09160 DNA-directed RNA polymerase subunit beta' SIDU_13980 DNA-directed RNA polymerase subunit alpha SIDU_10180 DNA-directed RNA polymerase subunit omega SIDU_07505 transcription-repair coupling factor SIDU_15880 DNA mismatch repair protein MutS SIDU_05390 DNA mismatch repair protein MutL SIDU_16130 exodeoxyribonuclease VII large subunit SIDU_13595 exodeoxyribonuclease VII small subunit SIDU_05645 DNA polymerase III subunit alpha SIDU_09525 DNA polymerase III subunit beta SIDU_02385 DNA polymerase III subunit chi SIDU_15560 DNA polymerase III subunit delta SIDU_06320 DNA polymerase SIDU_15735 DNA polymerase III subunit epsilon SIDU_04505 DNA polymerase III subunit gamma/tau SIDU_17435 single-stranded DNA-binding protein SIDU_14285 single-stranded DNA-binding protein SIDU_14615 single-stranded DNA-binding protein SIDU_03375 single-stranded DNA-binding protein SIDU_13925 single-stranded DNA-binding protein SIDU_17370 single-stranded DNA-binding protein SIDU_14185 DNA mismatch repair protein Vsr SIDU_01980 DNA mismatch repair protein Vsr SIDU_13300 DNA recombination/repair protein RecA SIDU_15275 ATP-dependent DNA helicase RuvA SIDU_15265 ATP-dependent DNA helicase RuvB SIDU_13660 Holliday junction resolvase SIDU_01435 primosomal protein N' SIDU_12040 metallophosphoesterase SIDU_08980 DNA repair protein RadA SIDU_09595 recombinase RecF SIDU_07495 ATP-dependent DNA helicase RecG SIDU_04185 DNA repair protein RecO SIDU_02740 recombination protein RecR SIDU_06490 DNA repair protein RecN SIDU_06380 DNA helicase UvrD SIDU_06385 double-strand break repair protein AddB SIDU_09115 ATP-binding protein SIDU_07845 DNA repair protein SIDU_07840 ATP-dependent DNA ligase SIDU_04710 DNA gyrase subunit A SIDU_15525 DNA gyrase subunit B SIDU_05765 DNA topoisomerase I SIDU_10070 DNA topoisomerase SIDU_04520 DNA-binding protein HU SIDU_18005 integration host factor SIDU_06125 hypothetical protein SIDU_13170 integration host factor subunit alpha SIDU_04590 integration host factor subunit beta SIDU_17105 ATP-dependent DNA helicase RecQ SIDU_16045 DNA polymerase IV SIDU_09615 LexA family transcriptional regulator SIDU_08530 hypothetical protein SIDU_08525 nucleotidyltransferase SIDU_08520 DNA polymerase SIDU_13555 RecX family transcriptional regulator SIDU_13185 helicase SIDU_15675 DNA ligase-associated DEXH box helicase SIDU_13090 ribonucleotide-diphosphate reductase subunit alpha SIDU_13100 ribonucleotide-diphosphate reductase subunit beta
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K05986 NUCS; nuclease S1 [EC:3.1.30.1] K05986 NUCS; nuclease S1 [EC:3.1.30.1] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K01520 dut; dUTP diphosphatase [EC:3.6.1.23] K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K02335 polA; DNA polymerase I [EC:2.7.7.7] K03701 uvrA; excinuclease ABC subunit A K03702 uvrB; excinuclease ABC subunit B K03703 uvrC; excinuclease ABC subunit C K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] K03555 mutS; DNA mismatch repair protein MutS K03572 mutL; DNA mismatch repair protein MutL K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K03111 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] K03553 recA; recombination protein RecA K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] K03547 sbcD; DNA repair protein SbcD/Mre11 K04485 radA; DNA repair protein RadA/Sms K03629 recF; DNA replication and repair protein RecF K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03584 recO; DNA repair protein RecO (recombination protein O) K06187 recR; recombination protein RecR K03631 recN; DNA repair protein RecN (Recombination protein N) K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] K06915 herA; DNA double-strand break repair helicase HerA and related ATPase K10979 ku; DNA end-binding protein Ku K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03530 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta K07455 recT; recombination protein RecT K04764 ihfA; integration host factor subunit alpha K05788 ihfB; integration host factor subunit beta K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K01356 lexA; repressor LexA [EC:3.4.21.88] K14160 imuA; protein ImuA K14161 imuB; protein ImuB K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] K03565 recX; regulatory protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
03029 Mitochondrial biogenesis [BR:sinb03029]
09183 Protein families: signaling and cellular processes
09185 Viral protein families
09184 RNA family
09190 Not Included in Pathway or Brite
KEGG Orthology (KO) - Sphingobium indicum B90A KEGG Orthology (KO) - Sphingobium indicum B90A