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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:smd03030]
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03410 Base excision repair [PATH:smd03410]
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03420 Nucleotide excision repair [PATH:smd03420]
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03430 Mismatch repair [PATH:smd03430]
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03440 Homologous recombination [PATH:smd03440]
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03450 Non-homologous end-joining [PATH:smd03450]
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 Smed_1426 Ku family containing protein
Smed_4302 Ku family containing protein
Smed_1427 Ku family containing protein
Smed_1305 DNA polymerase LigD ligase region
Smed_4835 ATP dependent DNA ligase
Smed_2631 DNA ligase D
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K10979 ku; DNA end-binding protein Ku
K10979 ku; DNA end-binding protein Ku
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:smd03000]
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03021 Transcription machinery [BR:smd03021]
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03019 Messenger RNA biogenesis [BR:smd03019]
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03041 Spliceosome
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03011 Ribosome [BR:smd03011]
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03009 Ribosome biogenesis [BR:smd03009]
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03016 Transfer RNA biogenesis [BR:smd03016]
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03012 Translation factors [BR:smd03012]
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03110 Chaperones and folding catalysts [BR:smd03110]
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04131 Membrane trafficking [BR:smd04131]
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04121 Ubiquitin system [BR:smd04121]
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03051 Proteasome [BR:smd03051]
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03032 DNA replication proteins [BR:smd03032]
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03036 Chromosome and associated proteins [BR:smd03036]
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03400 DNA repair and recombination proteins [BR:smd03400]
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Smed_4272 methylated-DNA--protein-cysteine methyltransferase
Smed_2820 uracil-DNA glycosylase
Smed_4271 DNA-3-methyladenine glycosylase
Smed_0543 A/G-specific adenine glycosylase
Smed_3375 endonuclease III
Smed_2514 NUDIX hydrolase
Smed_3554 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
Smed_3373 methylated-DNA--protein-cysteine methyltransferase
Smed_0073 methylated-DNA--protein-cysteine methyltransferase
Smed_3256 2OG-Fe(II) oxygenase
Smed_0647 phage SPO1 DNA polymerase-related protein
Smed_4407 phage SPO1 DNA polymerase-related protein
Smed_2525 HhH-GPD family protein
Smed_0399 DNA-3-methyladenine glycosylase I
Smed_3573 formamidopyrimidine-DNA glycosylase
Smed_1154 exodeoxyribonuclease III Xth
Smed_4299 exodeoxyribonuclease III Xth
Smed_3054 exodeoxyribonuclease III
Smed_1452 single-stranded-DNA-specific exonuclease RecJ
Smed_2070 DNA ligase, NAD-dependent
Smed_3381 DNA polymerase I
Smed_1235 excinuclease ABC, A subunit
Smed_1617 excinuclease ABC, B subunit
Smed_0782 excinuclease ABC, C subunit
Smed_2037 UvrD/REP helicase
Smed_5901 UvrD/REP helicase
Smed_0978 DNA-directed RNA polymerase, beta subunit
Smed_0979 DNA-directed RNA polymerase, beta' subunit
Smed_1010 DNA-directed RNA polymerase, alpha subunit
Smed_0676 DNA-directed RNA polymerase, omega subunit
Smed_1399 transcription-repair coupling factor
Smed_0030 DNA mismatch repair protein MutS
Smed_0428 DNA mismatch repair protein MutL
Smed_3498 exodeoxyribonuclease VII, large subunit
Smed_0495 exodeoxyribonuclease VII, small subunit
Smed_0921 DNA polymerase III, alpha subunit
Smed_3543 DNA polymerase III, beta subunit
Smed_0767 DNA polymerase III chi subunit HolC
Smed_3200 DNA polymerase III, delta subunit
Smed_1291 putative DNA polymerase III, delta' subunit protein
Smed_3213 DNA polymerase III, epsilon subunit
Smed_5270 Exonuclease RNase T and DNA polymerase III
Smed_3432 DNA polymerase III, subunits gamma and tau
Smed_1236 single-strand binding protein
Smed_1522 recA protein
Smed_2638 Holliday junction DNA helicase RuvA
Smed_2637 Holliday junction DNA helicase RuvB
Smed_2639 crossover junction endodeoxyribonuclease RuvC
Smed_2927 primosomal protein N'
Smed_0729 DNA repair protein RadA
Smed_3395 DNA replication and repair protein RecF
Smed_1401 ATP-dependent DNA helicase RecG
Smed_0693 DNA repair protein RecO
Smed_3435 recombination protein RecR
Smed_2071 DNA repair protein RecN
Smed_3242 Double-strand break repair helicase AddA
Smed_5440 UvrD/REP helicase
Smed_3243 Double-strand break repair protein AddB
Smed_0578 protein of unknown function DUF853 NPT hydrolase putative
Smed_1426 Ku family containing protein
Smed_4302 Ku family containing protein
Smed_1427 Ku family containing protein
Smed_1305 DNA polymerase LigD ligase region
Smed_4835 ATP dependent DNA ligase
Smed_2631 DNA ligase D
Smed_1241 DNA gyrase, A subunit
Smed_3220 DNA gyrase, B subunit
Smed_0932 DNA topoisomerase I
Smed_4410 putative DNA topoisomerase I protein
Smed_0875 histone family protein DNA-binding protein
Smed_0830 integration host factor, alpha subunit
Smed_0021 integration host factor, beta subunit
Smed_2226 ATP-dependent DNA helicase RecQ
Smed_5353 DNA-directed DNA polymerase
Smed_0923 DNA-directed DNA polymerase
Smed_1353 SOS-response transcriptional repressor, LexA
Smed_3023 conserved hypothetical protein
Smed_3022 conserved hypothetical protein
Smed_3021 DNA polymerase III, alpha subunit
Smed_0153 DEAD/H associated domain protein
Smed_1233 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K10979 ku; DNA end-binding protein Ku
K10979 ku; DNA end-binding protein Ku
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:smd03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Sinorhizobium medicae