DNA Repair and Recombination Proteins - Solanum pennellii

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     KO
 Eukaryotic type
   SSBR (single strand breaks repair)
     Direct repair
     BER (base exicision repair)
       DNA glycosylases
       AP endonucleases
       Long Patch-BER factors
         DNA polymerase delta complex
         DNA polymerase epsilon complex
         107023890 proliferating cell nuclear antigen
K04802 PCNA; proliferating cell nuclear antigen 
         107001612 flap endonuclease 1 isoform X1
K04799 FEN1; flap endonuclease-1 [EC:3.-.-.-] 
         107005036 DNA ligase 1
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
         107011627 DNA ligase 6 isoform X2
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
       Short Patch-BER factors
       Other BER factors
     NER (nucleotide excision repair)
       GGR (global genome repair) factors
       TCR (transcription coupled repair) factors
       TFIIH complex
       RPA (replication factor A)
       Other NER factors
         107012627 DNA excision repair protein ERCC-1
         107026862 DNA repair endonuclease UVH1
         107011358 DNA repair protein UVH3 isoform X1
         107005036 DNA ligase 1
         107011627 DNA ligase 6 isoform X2
         107012113 MMS19 nucleotide excision repair protein homolog isoform X1
         107008063 cullin-3A
         107011441 cullin-3A-like
         107021479 elongin-C
         107020334 uncharacterized protein LOC107020334 isoform X1
         107026510 uncharacterized protein LOC107026510
K10849 ERCC1; DNA excision repair protein ERCC-1 
K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] 
K10846 ERCC5; DNA excision repair protein ERCC-5 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K15075 MET18; DNA repair/transcription protein MET18/MMS19 
K03869 CUL3; cullin 3 
K03869 CUL3; cullin 3 
K03872 ELOC; elongin-C 
K03873 ELOB; elongin-B 
K15077 ELA1; elongin-A 
     MMR (mismatch excision repair)
       Mismatch and loop recognition factors
       MutS homologs specialized for meiosis
       MutL homologs
       DNA polymerase delta complex
       RPA (replication factor A)
       RFC (replication factor C)
       Other MMR factors
         107023890 proliferating cell nuclear antigen
         107009082 exonuclease 1
         107012887 exonuclease 1 isoform X1
         107029349 high mobility group B protein 1
         107005036 DNA ligase 1
         107011627 DNA ligase 6 isoform X2
K04802 PCNA; proliferating cell nuclear antigen 
K10746 EXO1; exonuclease 1 [EC:3.1.-.-] 
K10746 EXO1; exonuclease 1 [EC:3.1.-.-] 
K10802 HMGB1; high mobility group protein B1 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
   DSBR (double strand breaks repair)
   TLS (translesion DNA synthesis) factors
   Check point factors
   Other factors with a suspected DNA repair function
 
 Prokaryotic type

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Last updated: July 6, 2020