|
KO |
09100 Metabolism
|
|
|
09120 Genetic Information Processing
|
|
|
09121 Transcription
|
|
|
09122 Translation
|
|
|
09123 Folding, sorting and degradation
|
|
|
09124 Replication and repair
|
03030 DNA replication [PATH:tsa03030]
|
03410 Base excision repair [PATH:tsa03410]
|
03420 Nucleotide excision repair [PATH:tsa03420]
|
03430 Mismatch repair [PATH:tsa03430]
|
03440 Homologous recombination [PATH:tsa03440]
|
03450 Non-homologous end-joining [PATH:tsa03450]
|
AciPR4_1658 Ku protein
AciPR4_1657 DNA ligase D
|
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
|
03460 Fanconi anemia pathway
|
|
|
09126 Chromosome
|
|
|
09125 Information processing in viruses
|
|
|
09130 Environmental Information Processing
|
|
|
09140 Cellular Processes
|
|
|
09150 Organismal Systems
|
|
|
09160 Human Diseases
|
|
|
09180 Brite Hierarchies
|
|
|
09181 Protein families: metabolism
|
|
|
09182 Protein families: genetic information processing
|
03000 Transcription factors [BR:tsa03000]
|
03021 Transcription machinery [BR:tsa03021]
|
03019 Messenger RNA biogenesis [BR:tsa03019]
|
03041 Spliceosome
|
03011 Ribosome [BR:tsa03011]
|
03009 Ribosome biogenesis [BR:tsa03009]
|
03016 Transfer RNA biogenesis [BR:tsa03016]
|
03012 Translation factors [BR:tsa03012]
|
03110 Chaperones and folding catalysts [BR:tsa03110]
|
04131 Membrane trafficking [BR:tsa04131]
|
04121 Ubiquitin system [BR:tsa04121]
|
03051 Proteasome [BR:tsa03051]
|
03032 DNA replication proteins [BR:tsa03032]
|
03036 Chromosome and associated proteins [BR:tsa03036]
|
03400 DNA repair and recombination proteins [BR:tsa03400]
|
AciPR4_0463 methylated-DNA/protein-cysteine methyltransferase
AciPR4_2884 methylated-DNA/protein-cysteine methyltransferase
AciPR4_4003 DNA photolyase FAD-binding protein
AciPR4_3738 DNA-3-methyladenine glycosylase
AciPR4_0156 HhH-GPD family protein
AciPR4_1115 endonuclease III
AciPR4_0161 iron-sulfur cluster loop
AciPR4_2573 NUDIX hydrolase
AciPR4_3808 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
AciPR4_3057 transcriptional regulator, AraC family
AciPR4_2886 transcriptional regulator, AraC family
AciPR4_2888 2OG-Fe(II) oxygenase
AciPR4_3739 Uracil-DNA glycosylase superfamily
AciPR4_1880 phage SPO1 DNA polymerase-related protein
AciPR4_0985 Uracil-DNA glycosylase superfamily
AciPR4_1310 phage SPO1 DNA polymerase-related protein
AciPR4_4054 DNA-3-methyladenine glycosylase II
AciPR4_2885 HhH-GPD family protein
AciPR4_1927 DNA-3-methyladenine glycosylase I
AciPR4_3426 formamidopyrimidine-DNA glycosylase
AciPR4_0661 DNA-(apurinic or apyrimidinic site) lyase
AciPR4_3028 DNA glycosylase/AP lyase, H2TH DNA-binding protein
AciPR4_3121 apurinic endonuclease Apn1
AciPR4_1866 single-stranded-DNA-specific exonuclease RecJ
AciPR4_0264 DNA ligase, NAD-dependent
AciPR4_1888 excinuclease ABC, A subunit
AciPR4_1773 excinuclease ABC, A subunit
AciPR4_4183 excinuclease ABC, A subunit
AciPR4_1799 excinuclease ABC, B subunit
AciPR4_2452 excinuclease ABC, C subunit
AciPR4_0531 Nuclease subunit of the excinuclease complex
AciPR4_3495 UvrD/REP helicase
AciPR4_0388 DNA-directed RNA polymerase, beta subunit
AciPR4_0389 DNA-directed RNA polymerase, beta' subunit
AciPR4_3208 DNA-directed RNA polymerase, alpha subunit
AciPR4_1309 DNA-directed RNA polymerase, omega subunit
AciPR4_0541 transcription-repair coupling factor
AciPR4_1106 DNA mismatch repair protein MutS
AciPR4_0004 Smr protein/MutS2
AciPR4_0620 DNA mismatch repair protein MutL
AciPR4_1259 exodeoxyribonuclease VII, large subunit
AciPR4_1321 exodeoxyribonuclease VII, small subunit
AciPR4_1938 DNA polymerase III, alpha subunit
AciPR4_4224 DNA polymerase III, beta subunit
AciPR4_3091 DNA polymerase III, beta subunit
AciPR4_0682 DNA polymerase III, delta subunit
AciPR4_1895 DNA polymerase III, delta prime subunit
AciPR4_1504 DNA polymerase III, subunits gamma and tau
AciPR4_2945 single-strand binding protein
AciPR4_0898 single-strand binding protein
AciPR4_3763 single-strand binding protein
AciPR4_2391 single-strand binding protein
AciPR4_3391 DNA adenine methylase
AciPR4_2883 DNA mismatch endonuclease Vsr
AciPR4_4121 DNA mismatch endonuclease vsr
AciPR4_0691 recA protein
AciPR4_4235 Holliday junction DNA helicase RuvA
AciPR4_3416 Holliday junction DNA helicase RuvB
AciPR4_2469 crossover junction endodeoxyribonuclease RuvC
AciPR4_3090 endodeoxyribonuclease RusA
AciPR4_1311 primosomal protein N'
AciPR4_2625 ATP-dependent DNA helicase RecG
AciPR4_1179 DNA repair protein RecO
AciPR4_1502 recombination protein RecR
AciPR4_1996 DNA repair protein RecN
AciPR4_1658 Ku protein
AciPR4_1657 DNA ligase D
AciPR4_3894 DNA gyrase, A subunit
AciPR4_3324 DNA gyrase, B subunit
AciPR4_3124 DNA topoisomerase I
AciPR4_4162 histone family protein DNA-binding protein
AciPR4_1312 histone family protein DNA-binding protein
AciPR4_2500 helix-turn-helix Fis-type
AciPR4_2968 histone family protein DNA-binding protein
AciPR4_1973 ATP-dependent DNA helicase, RecQ family
AciPR4_3792 DNA-directed DNA polymerase
AciPR4_1805 transcriptional repressor, LexA family
AciPR4_3887 regulatory protein RecX
AciPR4_2989 PHP domain protein
AciPR4_3531 helicase c2
AciPR4_3579 DEAD/H associated domain protein
AciPR4_0660 DEAD/H associated domain protein
AciPR4_2067 ribonucleoside-diphosphate reductase, alpha subunit
AciPR4_2066 Ribonucleoside-diphosphate reductase
|
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K02347 polX; DNA polymerase (family X)
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
|
03029 Mitochondrial biogenesis [BR:tsa03029]
|
|
|
09183 Protein families: signaling and cellular processes
|
|
|
09185 Viral protein families
|
|
|
09184 RNA family
|
|
|
09190 Not Included in Pathway or Brite
|