DNA Repair and Recombination Proteins - Vitis vinifera (wine grape)

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     KO
 Eukaryotic Type
   SSBR (single strand breaks repair)
     Direct repair
     BER (base exicision repair)
       DNA glycosylases
       AP endonucleases
       Long Patch-BER factors
         DNA polymerase delta complex
         DNA polymerase epsilon complex
         100260468 proliferating cell nuclear antigen
K04802 PCNA; proliferating cell nuclear antigen 
         100248466 proliferating cell nuclear antigen-like
K04802 PCNA; proliferating cell nuclear antigen 
         100242559 flap endonuclease 1
K04799 FEN1; flap endonuclease-1 [EC:3.-.-.-] 
         100256907 DNA ligase 1
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
         100266816 DNA ligase 6
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
       Short Patch-BER factors
       Other BER factors
     NER (nucleotide excision repair)
       GGR (global genome repair) factors
       TCR (transcription coupled repair) factors
       TFIIH complex
       RPA (replication factor A)
       Other NER factors
         100244316 DNA excision repair protein ERCC-1
         100247853 DNA repair endonuclease UVH1
         100245663 DNA repair protein UVH3
         100256907 DNA ligase 1
         100266816 DNA ligase 6
         100265464 cullin-3A
         100254227 cullin-3B-like
         100258618 transcription elongation factor B polypeptide 1
         100252279 transcription elongation factor B polypeptide 3
K10849 ERCC1; DNA excision repair protein ERCC-1 
K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] 
K10846 ERCC5; DNA excision repair protein ERCC-5 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K03869 CUL3; cullin 3 
K03869 CUL3; cullin 3 
K03872 ELOC; elongin-C 
K15077 ELA1; elongin-A 
     MMR (mismatch excision repair)
       Mismatch and loop recognition factors
       MutS homologs specialized for meiosis
       MutL homologs
       DNA polymerase delta complex
       RPA (replication factor A)
       RFC (replication factor C)
       Other MMR factors
         100260468 proliferating cell nuclear antigen
         100248466 proliferating cell nuclear antigen-like
         100245156 exonuclease 1
         100262876 exonuclease 1
         100246802 high mobility group B protein 1-like
         100246082 high mobility group-like
         100257544 high mobility group B2 protein-like
         100256907 DNA ligase 1
         100266816 DNA ligase 6
K04802 PCNA; proliferating cell nuclear antigen 
K04802 PCNA; proliferating cell nuclear antigen 
K10746 EXO1; exonuclease 1 [EC:3.1.-.-] 
K10746 EXO1; exonuclease 1 [EC:3.1.-.-] 
K10802 HMGB1; high mobility group protein B1 
K10802 HMGB1; high mobility group protein B1 
K10802 HMGB1; high mobility group protein B1 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] 
   DSBR (double strand breaks repair)
   TLS (translesion DNA synthesis) factors
   Check point factors
   Other factors with a suspected DNA repair function
 
 Prokaryotic Type

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Last updated: June 5, 2019