KEGG Orthology (KO) - Xylanimicrobium sp. FW10M-9

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:xya03030]
     03410 Base excision repair [PATH:xya03410]
     03420 Nucleotide excision repair [PATH:xya03420]
     03430 Mismatch repair [PATH:xya03430]
     03440 Homologous recombination [PATH:xya03440]
     03450 Non-homologous end-joining [PATH:xya03450]
       ET471_17025 Ku protein
       ET471_17040 ATP-dependent DNA ligase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
     03460 Fanconi anemia pathway
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:xya03000]
     03021 Transcription machinery [BR:xya03021]
     03019 Messenger RNA biogenesis [BR:xya03019]
     03041 Spliceosome
     03011 Ribosome [BR:xya03011]
     03009 Ribosome biogenesis [BR:xya03009]
     03016 Transfer RNA biogenesis [BR:xya03016]
     03012 Translation factors [BR:xya03012]
     03110 Chaperones and folding catalysts [BR:xya03110]
     04131 Membrane trafficking [BR:xya04131]
     04121 Ubiquitin system [BR:xya04121]
     03051 Proteasome [BR:xya03051]
     03032 DNA replication proteins [BR:xya03032]
     03036 Chromosome and associated proteins [BR:xya03036]
     03400 DNA repair and recombination proteins [BR:xya03400]
       ET471_04210 methylated-DNA--[protein]-cysteine S-methyltransferase
       ET471_03140 uracil-DNA glycosylase
       ET471_12160 DNA-3-methyladenine glycosylase
       ET471_07485 A/G-specific adenine glycosylase
       ET471_03565 nth; endonuclease III
       ET471_02015 ATP-dependent DNA ligase
       ET471_03080 DEAD/DEAH box helicase
       ET471_05555 NUDIX domain-containing protein
       ET471_15400 dUTP diphosphatase
       ET471_14760 uracil-DNA glycosylase
       ET471_04205 DNA-3-methyladenine glycosylase 2 family protein
       ET471_05595 DNA-3-methyladenine glycosylase I
       ET471_11465 Fpg/Nei family DNA glycosylase
       ET471_17230 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
       ET471_11635 Fpg/Nei family DNA glycosylase
       ET471_10885 Fpg/Nei family DNA glycosylase
       ET471_04185 exodeoxyribonuclease III
       ET471_09240 exodeoxyribonuclease III
       ET471_04745 deoxyribonuclease IV
       ET471_13320 polA; DNA polymerase I
       ET471_13430 uvrA; excinuclease ABC subunit UvrA
       ET471_13390 uvrB; excinuclease ABC subunit UvrB
       ET471_13440 uvrC; excinuclease ABC subunit UvrC
       ET471_09325 ATP-dependent helicase
       ET471_09345 ATP-dependent DNA helicase UvrD2
       ET471_08530 rpoB; DNA-directed RNA polymerase subunit beta
       ET471_08535 DNA-directed RNA polymerase subunit beta'
       ET471_08705 DNA-directed RNA polymerase subunit alpha
       ET471_14415 DNA-directed RNA polymerase subunit omega
       ET471_02215 mfd; transcription-repair coupling factor
       ET471_09870 exodeoxyribonuclease VII large subunit
       ET471_09855 exodeoxyribonuclease VII small subunit
       ET471_11935 DNA polymerase III subunit alpha
       ET471_05310 DNA polymerase III subunit beta
       ET471_16910 holA; DNA polymerase III subunit delta
       ET471_07220 DNA polymerase III subunit delta'
       ET471_15795 DEDD exonuclease domain-containing protein
       ET471_08910 DNA polymerase III subunit epsilon
       ET471_06800 DNA polymerase III subunit gamma and tau
       ET471_05090 single-stranded DNA-binding protein
       ET471_08360 single-stranded DNA-binding protein
       ET471_10790 single-stranded DNA-binding protein
       ET471_11650 recA; recombinase RecA
       ET471_14690 ruvA; Holliday junction branch migration protein RuvA
       ET471_14685 ruvB; Holliday junction branch migration DNA helicase RuvB
       ET471_14695 ruvC; crossover junction endodeoxyribonuclease RuvC
       ET471_14400 primosomal protein N'
       ET471_07500 radA; DNA repair protein RadA
       ET471_05320 recF; DNA replication/repair protein RecF
       ET471_17270 ATP-dependent DNA helicase RecG
       ET471_16745 recO; DNA repair protein RecO
       ET471_06890 recR; recombination protein RecR
       ET471_12225 recN; DNA repair protein RecN
       ET471_16255 cas1e; type I-E CRISPR-associated endonuclease Cas1
       ET471_17025 Ku protein
       ET471_17040 ATP-dependent DNA ligase
       ET471_05335 gyrA; DNA gyrase subunit A
       ET471_15455 DNA topoisomerase IV subunit A
       ET471_05330 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B
       ET471_15715 type IIA DNA topoisomerase subunit B
       ET471_07135 topA; type I DNA topoisomerase
       ET471_04630 integration host factor
       ET471_11990 RecQ family ATP-dependent DNA helicase
       ET471_16120 RecQ family ATP-dependent DNA helicase
       ET471_11805 DNA polymerase IV
       ET471_11745 lexA; transcriptional repressor LexA
       ET471_12945 DNA polymerase Y family protein
       ET471_12950 error-prone DNA polymerase
       ET471_11655 regulatory protein RecX
       ET471_11735 ATP-dependent DNA helicase
       ET471_07015 NUDIX hydrolase
       ET471_12255 NUDIX hydrolase
       ET471_01030 nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha
       ET471_01025 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:3.6.4.12]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K15342 cas1; CRISP-associated protein Cas1
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:3.6.4.12]
K23258 mutT1; 8-oxo-dGTP phosphatase [EC:3.6.1.-]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
     03029 Mitochondrial biogenesis [BR:xya03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: May 21, 2019