| T01001 | hsa | Homo sapiens (human) |
| T01005 | ptr | Pan troglodytes (chimpanzee) |
| T02283 | pps | Pan paniscus (bonobo) |
| T02442 | ggo | Gorilla gorilla gorilla (western lowland gorilla) |
| T01416 | pon | Pongo abelii (Sumatran orangutan) |
| T03265 | nle | Nomascus leucogenys (northern white-cheeked gibbon) |
| T01028 | mcc | Macaca mulatta (rhesus monkey) |
| T02918 | mcf | Macaca fascicularis (crab-eating macaque) |
| T04361 | csab | Chlorocebus sabaeus (green monkey) |
| T03989 | rro | Rhinopithecus roxellana (golden snub-nosed monkey) |
| T04641 | rbb | Rhinopithecus bieti (black snub-nosed monkey) |
| T03264 | cjc | Callithrix jacchus (white-tufted-ear marmoset) |
| T04350 | sbq | Saimiri boliviensis boliviensis (Bolivian squirrel monkey) |
| T01002 | mmu | Mus musculus (mouse) |
| T05910 | mcal | Mus caroli (Ryukyu mouse) |
| T05929 | mpah | Mus pahari (shrew mouse) |
| T01003 | rno | Rattus norvegicus (rat) |
| T05884 | mun | Meriones unguiculatus (Mongolian gerbil) |
| T02813 | cge | Cricetulus griseus (Chinese hamster) |
| T03372 | ngi | Nannospalax galili (Upper Galilee mountains blind mole rat) |
| T02812 | hgl | Heterocephalus glaber (naked mole rat) |
| T04791 | ccan | Castor canadensis (American beaver) |
| T03373 | ocu | Oryctolagus cuniculus (rabbit) |
| T02978 | tup | Tupaia chinensis (Chinese tree shrew) |
| T01007 | cfa | Canis lupus familiaris (dog) |
| T05911 | vvp | Vulpes vulpes (red fox) |
| T01329 | aml | Ailuropoda melanoleuca (giant panda) |
| T03271 | umr | Ursus maritimus (polar bear) |
| T05909 | uah | Ursus arctos horribilis |
| T05148 | oro | Odobenus rosmarus divergens (Pacific walrus) |
| T05871 | elk | Enhydra lutris kenyoni (northern sea otter) |
| T02385 | fca | Felis catus (domestic cat) |
| T02988 | ptg | Panthera tigris altaica (Amur tiger) |
| T06062 | ppad | Panthera pardus (leopard) |
| T04657 | aju | Acinonyx jubatus (cheetah) |
| T01008 | bta | Bos taurus (cow) |
| T02919 | bom | Bos mutus (wild yak) |
| T04792 | biu | Bos indicus (zebu cattle) |
| T05912 | bbub | Bubalus bubalis (water buffalo) |
| T02910 | chx | Capra hircus (goat) |
| T03117 | oas | Ovis aries (sheep) |
| T01009 | ssc | Sus scrofa (pig) |
| T02979 | cfr | Camelus ferus (Wild Bactrian camel) |
| T04642 | cdk | Camelus dromedarius (Arabian camel) |
| T03086 | bacu | Balaenoptera acutorostrata scammoni (minke whale) |
| T03090 | lve | Lipotes vexillifer (Yangtze River dolphin) |
| T05247 | oor | Orcinus orca (killer whale) |
| T05885 | dle | Delphinapterus leucas (beluga whale) |
| T06011 | pcad | Physeter catodon (sperm whale) |
| T01058 | ecb | Equus caballus (horse) |
| T04644 | epz | Equus przewalskii (Przewalski's horse) |
| T04645 | eai | Equus asinus (ass) |
| T02920 | myb | Myotis brandtii (Brandt's bat) |
| T02992 | myd | Myotis davidii |
| T05883 | mna | Miniopterus natalensis |
| T04661 | hai | Hipposideros armiger (great roundleaf bat) |
| T05907 | dro | Desmodus rotundus (common vampire bat) |
| T02993 | pale | Pteropus alecto (black flying fox) |
| T06036 | ray | Rousettus aegyptiacus (Egyptian rousette) |
| T06054 | mjv | Manis javanica (Malayan pangolin) |
| T04351 | lav | Loxodonta africana (African savanna elephant) |
| T05135 | tmu | Trichechus manatus latirostris (Florida manatee) |
| T01031 | mdo | Monodelphis domestica (opossum) |
| T02286 | shr | Sarcophilus harrisii (Tasmanian devil) |
| T05867 | pcw | Phascolarctos cinereus (koala) |
| T01045 | oaa | Ornithorhynchus anatinus (platypus) |
| T01006 | gga | Gallus gallus (chicken) |
| T01523 | mgp | Meleagris gallopavo (turkey) |
| T04297 | cjo | Coturnix japonica (Japanese quail) |
| T06015 | nmel | Numida meleagris (helmeted guineafowl) |
| T02816 | apla | Anas platyrhynchos (mallard) |
| T04896 | acyg | Anser cygnoides domesticus (swan goose) |
| T01082 | tgu | Taeniopygia guttata (zebra finch) |
| T05897 | lsr | Lonchura striata domestica (Bengalese finch) |
| T05755 | scan | Serinus canaria (common canary) |
| T03755 | gfr | Geospiza fortis (medium ground-finch) |
| T02815 | fab | Ficedula albicollis (collared flycatcher) |
| T02921 | phi | Pseudopodoces humilis (Tibetan ground-tit) |
| T04864 | pmaj | Parus major (Great Tit) |
| T05602 | ccae | Cyanistes caeruleus (blue tit) |
| T03546 | ccw | Corvus cornix (hooded crow) |
| T05887 | etl | Empidonax traillii (willow flycatcher) |
| T02856 | fpg | Falco peregrinus (peregrine falcon) |
| T02911 | fch | Falco cherrug (Saker falcon) |
| T02912 | clv | Columba livia (rock pigeon) |
| T05152 | egz | Egretta garzetta (little egret) |
| T05756 | nni | Nipponia nippon (crested ibis) |
| T05777 | acun | Athene cunicularia (burrowing owl) |
| T06012 | padl | Pygoscelis adeliae (Adelie penguin) |
| T04298 | aam | Apteryx mantelli mantelli (brown kiwi) |
| T02922 | asn | Alligator sinensis (Chinese alligator) |
| T03087 | amj | Alligator mississippiensis (American alligator) |
| T02980 | pss | Pelodiscus sinensis (Chinese soft-shelled turtle) |
| T02989 | cmy | Chelonia mydas (green sea turtle) |
| T04662 | cpic | Chrysemys picta (western painted turtle) |
| T01608 | acs | Anolis carolinensis (green anole) |
| T05000 | pvt | Pogona vitticeps (central bearded dragon) |
| T03091 | pbi | Python bivittatus (Burmese python) |
| T05763 | pmur | Protobothrops mucrosquamatus (Taiwan habu) |
| T06107 | tsr | Thamnophis sirtalis |
| T06059 | pmua | Podarcis muralis (common wall lizard) |
| T04299 | gja | Gekko japonicus |
| T01010 | xla | Xenopus laevis (African clawed frog) |
| T01011 | xtr | Xenopus tropicalis (western clawed frog) |
| T04897 | npr | Nanorana parkeri |
| T01004 | dre | Danio rerio (zebrafish) |
| T04916 | srx | Sinocyclocheilus rhinocerous |
| T04917 | sanh | Sinocyclocheilus anshuiensis |
| T04918 | sgh | Sinocyclocheilus grahami |
| T05134 | ccar | Cyprinus carpio (common carp) |
| T04658 | ipu | Ictalurus punctatus (channel catfish) |
| T05759 | phyp | Pangasianodon hypophthalmus (striped catfish) |
| T05042 | amex | Astyanax mexicanus (Mexican tetra) |
| T05787 | eee | Electrophorus electricus (electric eel) |
| T02386 | tru | Takifugu rubripes (torafugu) |
| T04346 | tng | Tetraodon nigroviridis (spotted green pufferfish) |
| T04659 | lco | Larimichthys crocea (large yellow croaker) |
| T04920 | ncc | Notothenia coriiceps (black rockcod) |
| T02814 | mze | Maylandia zebra (zebra mbuna) |
| T06104 | onl | Oreochromis niloticus (Nile tilapia) |
| T02443 | ola | Oryzias latipes (Japanese medaka) |
| T02923 | xma | Xiphophorus maculatus (southern platyfish) |
| T05908 | xco | Xiphophorus couchianus (Monterrey platyfish) |
| T05149 | pret | Poecilia reticulata (guppy) |
| T06110 | cvg | Cyprinodon variegatus (sheepshead minnow) |
| T05163 | nfu | Nothobranchius furzeri (turquoise killifish) |
| T05608 | kmr | Kryptolebias marmoratus (mangrove rivulus) |
| T06063 | alim | Austrofundulus limnaeus (annual killifish) |
| T06018 | aoce | Amphiprion ocellaris (clown anemonefish) |
| T04866 | csem | Cynoglossus semilaevis (tongue sole) |
| T06037 | pov | Paralichthys olivaceus (Japanese flounder) |
| T04895 | lcf | Lates calcarifer (barramundi perch) |
| T05606 | sdu | Seriola dumerili (greater amberjack) |
| T06058 | slal | Seriola lalandi dorsalis (Yellowtail amberjack) |
| T04969 | hcq | Hippocampus comes (tiger tail seahorse) |
| T05002 | bpec | Boleophthalmus pectinirostris (great blue-spotted mudskipper) |
| T05607 | malb | Monopterus albus (swamp eel) |
| T04363 | sasa | Salmo salar (Atlantic salmon) |
| T05605 | otw | Oncorhynchus tshawytscha (Chinook salmon) |
| T05762 | salp | Salvelinus alpinus (Arctic char) |
| T04894 | els | Esox lucius (northern pike) |
| T04919 | sfm | Scleropages formosus (Asian bonytongue) |
| T05788 | pki | Paramormyrops kingsleyae |
| T02913 | lcm | Latimeria chalumnae (coelacanth) |
| T03088 | cmk | Callorhinchus milii (elephant shark) |
| T06055 | rtp | Rhincodon typus (whale shark) |
Organism group: Vertebrates