KEGG pathway modules
Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: T31007_00010 T31007_01200 T31007_01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: T31007_00010 T31007_01200 T31007_01230 T31007_01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: T31007_00010 T31007_00020 T31007_01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: T31007_00010 T31007_00020 T31007_00620 T31007_01200 T31007_01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: T31007_00020 T31007_01200 T31007_01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: T31007_00020 T31007_01200 T31007_01210 T31007_01230 T31007_01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: T31007_00020 T31007_01200 T31007_01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: T31007_00030 T31007_01200 T31007_01100 T31007_01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: T31007_00030 T31007_01200 T31007_01100 T31007_01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: T31007_00030 T31007_01200 T31007_01230 T31007_01100 T31007_01120]
M00580 Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH: T31007_00030 T31007_01200 T31007_01230 T31007_01100 T31007_01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: T31007_00030 T31007_00230 T31007_01200 T31007_01230 T31007_01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH: T31007_00030 T31007_01200 T31007_01100 T31007_01120]
M00308 Semi-phosphorylative Entner-Doudoroff pathway, gluconate => glycerate-3P [PATH: T31007_00030 T31007_01200 T31007_01100 T31007_01120]
Other carbohydrate metabolism
M00631 D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:T31007_00040 T31007_00030 T31007_01100]
M00061 D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:T31007_00040 T31007_00030 T31007_01100]
M00081 Pectin degradation [PATH:T31007_00040 T31007_01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:T31007_00052 T31007_01100]
M00552 D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:T31007_00052 T31007_01100]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:T31007_00500 T31007_01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH:T31007_00500 T31007_01100]
M00565 Trehalose biosynthesis, D-glucose 1P => trehalose [PATH:T31007_00500 T31007_01100 T31007_01110]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:T31007_00520 T31007_01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:T31007_00520 T31007_00052 T31007_01100]
M00012 Glyoxylate cycle [PATH:T31007_00630 T31007_01200 T31007_01100 T31007_01110]
M00373 Ethylmalonyl pathway [PATH:T31007_00630 T31007_01200 T31007_01100 T31007_01120]
M00741 Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:T31007_00280 T31007_00630 T31007_00640 T31007_01200 T31007_01100]
Energy metabolism
Carbon fixation
Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
Lipid metabolism
Fatty acid metabolism
Sterol biosynthesis
Lipid metabolism
Nucleotide metabolism
Purine metabolism
Pyrimidine metabolism
Amino acid metabolism
Serine and threonine metabolism
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
Lysine metabolism
Arginine and proline metabolism
Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00127 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH: T31007_00730 T31007_01240 T31007_01100]
M00896 Thiamine biosynthesis, archaea, AIR (+ NAD+) => TMP/TPP [PATH: T31007_00730 T31007_01240 T31007_01100]
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH: T31007_00730 T31007_01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH: T31007_00740 T31007_01240 T31007_01100 T31007_01110]
M00124 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH: T31007_00750 T31007_01240 T31007_01100]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH: T31007_00750 T31007_01240 T31007_01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH: T31007_00760 T31007_01240 T31007_01100]
M00912 NAD biosynthesis, tryptophan => quinolinate => NAD [PATH: T31007_00380 T31007_00760 T31007_01240 T31007_01100]
M00622 Nicotinate degradation, nicotinate => fumarate [PATH: T31007_00760 T31007_01100 T31007_01120]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH: T31007_00770 T31007_01240 T31007_01100 T31007_01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH: T31007_00770 T31007_01240 T31007_01100]
M00914 Coenzyme A biosynthesis, archaea, 2-oxoisovalerate => 4-phosphopantoate => CoA [PATH: T31007_00770 T31007_01240 T31007_01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH: T31007_00780 T31007_01240 T31007_01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH: T31007_00780 T31007_01240 T31007_01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH: T31007_00785 T31007_01240 T31007_01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH: T31007_00790 T31007_00670 T31007_01240 T31007_01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH: T31007_00790 T31007_01240 T31007_01100]
M00140 C1-unit interconversion, prokaryotes [PATH: T31007_00670 T31007_01240 T31007_01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH: T31007_00860 T31007_01240 T31007_01100 T31007_01110]
M00868 Heme biosynthesis, animals and fungi, glycine => heme [PATH: T31007_00860 T31007_01240 T31007_01100 T31007_01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH: T31007_00860 T31007_01240 T31007_01100 T31007_01110]
M00926 Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH: T31007_00860 T31007_01240 T31007_01100]
M00924 Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH: T31007_00860 T31007_01240 T31007_01100]
M00925 Cobalamin biosynthesis, aerobic, uroporphyrinogen III => precorrin 2 => cobyrinate a,c-diamide [PATH: T31007_00860 T31007_01240 T31007_01100]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH: T31007_00860 T31007_01240 T31007_01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH: T31007_00130 T31007_01240 T31007_01100 T31007_01110]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH: T31007_00130 T31007_01240 T31007_01100 T31007_01110]
M00930 Menaquinone biosynthesis, futalosine pathway [PATH: T31007_00130 T31007_01240 T31007_01100]
M00932 Phylloquinone biosynthesis, chorismate (+ phytyl-PP) => phylloquinol [PATH: T31007_00130 T31007_01240 T31007_01100 T31007_01110]
M00112 Tocopherol/tocotorienol biosynthesis, homogentisate + phytyl/geranylgeranyl-PP => tocopherol/tocotorienol [PATH: T31007_00130 T31007_01240 T31007_01100 T31007_01110]
Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Signature modules
Gene set
Pathogenicity
Drug resistance
M00642 Multidrug resistance, efflux pump MexJK-OprM
M00698 Multidrug resistance, efflux pump BpeEF-OprC
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00611 Oxygenic photosynthesis in plants and cyanobacteria
M00612 Anoxygenic photosynthesis in purple bacteria
M00615 Nitrate assimilation
M00616 Sulfate-sulfur assimilation
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