KEGG Modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:bsav00010 bsav01200 bsav01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH:bsav00010 bsav01200 bsav01230 bsav01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bsav00010 bsav00020 bsav01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bsav00010 bsav00020 bsav00620 bsav00785 bsav01200 bsav01210 bsav01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:bsav00020 bsav01200 bsav01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bsav00020 bsav01200 bsav01210 bsav01230 bsav01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bsav00020 bsav01200 bsav01210 bsav01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH:bsav00030 bsav01200 bsav01100 bsav01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:bsav00030 bsav01200 bsav01100 bsav01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:bsav00030 bsav01200 bsav01230 bsav01100 bsav01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH:bsav00030 bsav00230 bsav01200 bsav01230 bsav01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:bsav00030 bsav01200 bsav01100 bsav01120]

Other carbohydrate metabolism
M00552 D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:bsav00052 bsav01100]
M00012 Glyoxylate cycle [PATH:bsav00630 bsav01200 bsav01100 bsav01110]
M00982 Methylcitrate cycle [PATH:bsav00640 bsav00020 bsav01200 bsav01100 bsav01120]

Energy metabolism
Carbon fixation
M00168 CAM (Crassulacean acid metabolism), dark [PATH:bsav00620 bsav00710 bsav01200 bsav01100 bsav01120]
M00579 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:bsav00430 bsav00620 bsav00720 bsav01200 bsav01100 bsav01120]

Methane metabolism
Nitrogen metabolism
M00531 Assimilatory nitrate reduction, nitrate => ammonia [PATH:bsav00910 bsav01310 bsav01100 bsav01120]
M00530 Dissimilatory nitrate reduction, nitrate => ammonia [PATH:bsav00910 bsav01310 bsav01100 bsav01120]

Sulfur metabolism
M00176 Assimilatory sulfate reduction, sulfate => H2S [PATH:bsav00920 bsav01320 bsav01100 bsav01120]

Photosynthesis
ATP synthesis
M00144 NADH:quinone oxidoreductase, prokaryotes [PATH:bsav00190 bsav01100]
M00149 Succinate dehydrogenase, prokaryotes [PATH:bsav00190 bsav01100]
M00151 Cytochrome bc1 complex respiratory unit [PATH:bsav00190 bsav01100]
M00155 Cytochrome c oxidase, prokaryotes [PATH:bsav00190 bsav01100]
M00153 Cytochrome bd ubiquinol oxidase [PATH:bsav00190 bsav01100]
M00417 Cytochrome o ubiquinol oxidase [PATH:bsav00190 bsav01100]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH:bsav00190 bsav01100]

Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation [PATH:bsav00061 bsav01212 bsav01100]
M00083 Fatty acid biosynthesis, elongation [PATH:bsav00061 bsav01212 bsav01100]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH:bsav00061 bsav00071 bsav01212 bsav01100]
M00087 beta-Oxidation [PATH:bsav00071 bsav01212 bsav01100]

Sterol biosynthesis
Lipid metabolism
M00098 Acylglycerol degradation [PATH:bsav00561 bsav01100]
M00091 Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:bsav00564 bsav01100]
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:bsav00564 bsav01100]

Nucleotide metabolism
Purine metabolism
M00048 De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:bsav00230 bsav01100]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:bsav00230 bsav01232 bsav01240 bsav01100]
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:bsav00230 bsav01232 bsav01100]
M00053 Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:bsav00230 bsav00240 bsav01232 bsav01100]
M00958 Adenine ribonucleotide degradation, AMP => Urate [PATH:bsav00230 bsav01232 bsav01100]
M00959 Guanine ribonucleotide degradation, GMP => Urate [PATH:bsav00230 bsav01232 bsav01100]

Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:bsav00240 bsav01232 bsav01240 bsav01100]
M00938 Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:bsav00240 bsav01232 bsav01100]

Amino acid metabolism
Serine and threonine metabolism
M00020 Serine biosynthesis, glycerate-3P => serine [PATH:bsav00260 bsav00680 bsav01200 bsav01230 bsav01100]
M00018 Threonine biosynthesis, aspartate => homoserine => threonine [PATH:bsav00260 bsav01230 bsav01100 bsav01110]
M00621 Glycine cleavage system [PATH:bsav00260 bsav00630 bsav00670 bsav00785 bsav01200 bsav01100]
M00555 Betaine biosynthesis, choline => betaine [PATH:bsav00260 bsav00670 bsav01100]
M00975 Betaine degradation, bacteria, betaine => pyruvate [PATH:bsav00260 bsav01100]

Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH:bsav00270 bsav00920 bsav01320 bsav01200 bsav01230 bsav01100 bsav01110]

Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:bsav00290 bsav00770 bsav01210 bsav01230 bsav01100 bsav01110]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:bsav00290 bsav01230 bsav01100]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:bsav00290 bsav01210 bsav01230 bsav01100 bsav01110]
M00036 Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:bsav00280 bsav01100]

Lysine metabolism
M00016 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:bsav00300 bsav01230 bsav01100]

Arginine and proline metabolism
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH:bsav00220 bsav01210 bsav01230 bsav01100]
M00844 Arginine biosynthesis, ornithine => arginine [PATH:bsav00220 bsav01230 bsav01100]
M00015 Proline biosynthesis, glutamate => proline [PATH:bsav00330 bsav01230 bsav01100]
M00970 Proline degradation, proline => glutamate [PATH:bsav00330 bsav01100]
M00879 Arginine succinyltransferase pathway, arginine => glutamate [PATH:bsav00330 bsav01100]

Polyamine biosynthesis
Histidine metabolism
M00045 Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:bsav00340 bsav01100]

Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:bsav00400 bsav01230 bsav01100 bsav01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH:bsav00400 bsav01230 bsav01100 bsav01110]
M00024 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:bsav00400 bsav01230 bsav01100 bsav01110]
M00025 Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:bsav00400 bsav01230 bsav01100]
M00044 Tyrosine degradation, tyrosine => homogentisate [PATH:bsav00350 bsav01100]
M00533 Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate [PATH:bsav00350 bsav01220 bsav01100 bsav01120]

Other amino acid metabolism
M00118 Glutathione biosynthesis, glutamate => glutathione [PATH:bsav00480 bsav01240 bsav01100]
M00948 Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:bsav00470 bsav01100]

Glycan metabolism
Nucleotide sugar biosynthesis
M00909 UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc [PATH:bsav00520 bsav01250 bsav01100]
M00996 UDP-MurNAc biosynthesis, anhMurNAc => UDP-MurNAc [PATH:bsav00520 bsav01250 bsav01100 bsav01100]
M00995 UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc [PATH:bsav00520 bsav01250 bsav01100]
M00549 UDP-Glc biosynthesis, Glc => UDP-Glc [PATH:bsav00520 bsav01250 bsav01100]
M01000 GDP-Man biosynthesis, Fru-6P => GDP-Man [PATH:bsav00520 bsav00051 bsav01250 bsav01100]
M00063 CMP-KDO biosynthesis, ribulose-5P => CMP-KDO [PATH:bsav00541 bsav01250 bsav01100]
M00064 ADP-LDmanHep biosynthesis, sedoheptulose-7P => ADP-LDmanHep [PATH:bsav00541 bsav01250 bsav01100]
M00793 dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha [PATH:bsav00521 bsav00523 bsav00541 bsav01250 bsav01100 bsav01110]
M01019 GDP-6-deoxy-Tal biosynthesis, GDP-Man => GDP-6-deoxy-Tal [PATH:bsav00541 bsav00051 bsav01250 bsav01100]

Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Other polysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:bsav00730 bsav01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:bsav00760 bsav01240 bsav01100]
M00622 Nicotinate degradation, nicotinate => fumarate [PATH:bsav00760 bsav01100 bsav01120]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:bsav00770 bsav01240 bsav01100 bsav01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:bsav00770 bsav01240 bsav01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:bsav00780 bsav01240 bsav01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:bsav00785 bsav01240 bsav01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:bsav00790 bsav00670 bsav01240 bsav01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:bsav00790 bsav01240 bsav01100]
M00988 PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine [PATH:bsav00790 bsav01100]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:bsav00860 bsav01240 bsav01100 bsav01110]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:bsav00860 bsav01240 bsav01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:bsav00130 bsav01240 bsav01100 bsav01110]
M00989 Ubiquinone biosynthesis, O2-independent, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:bsav00130 bsav01240 bsav01100 bsav01110]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
M00790 Pyrrolnitrin biosynthesis, tryptophan => pyrrolnitrin [PATH:bsav00404 bsav01100 bsav01110]

Biosynthesis of other compounds
Xenobiotics biodegradation
Aromatics degradation
M00551 Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol [PATH:bsav00362 bsav00622 bsav01220 bsav01100 bsav01120]
M00637 Anthranilate degradation, anthranilate => catechol [PATH:bsav00627 bsav01100 bsav01120]
M00568 Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:bsav00362 bsav01220 bsav01100 bsav01120]

Gene set
Pathogenicity
Drug resistance
M00643 Multidrug resistance, efflux pump MexXY-OprM
M00698 Multidrug resistance, efflux pump BpeEF-OprC

Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00615 Nitrate assimilation
M00616 Sulfate-sulfur assimilation