KEGG image  Secondary Metabolites in Pathway Maps

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Biosynthetic pathways and modules of secondary metabolites

Map Pathway Module KEGG ID Name Remark
00902 Geraniol biosynthesis C01500 Geraniol Monoterpenoid
Myrcene biosynthesis C06074 Myrcene
Limonene biosynthesis C00521
C06099
(S)-Limonene
(R)-Limonene
Menthol biosynthesis C00400 Menthol
Carvone biosynthesis C01767
C11383
(-)-Carvone
(+)-Carvone
Pinene biosynthesis C06308
C06307
alpha-Pinene
beta-Pinene
Camphene biosynthesis C06305
C06304
(-)-Camphene
(+)-Camphene
Camphor biosynthesis C01765
C00808
(+)-Borneol
(+)-Camphor
Secologanin biosynthesis C01433
C01852
Loganin
Secologanin
Iridoid/secoiridoid
00909 Farnesol biosynthesis C01126
C03220
(2E,6E)-Farnesol
(2Z,6E)-Farnesol
Sesquiterpenoid
Germacrene biosynthesis C16141
C09672
C19747
C16142
Germacrene A
Germacrene B
Germacrene C
Germacrene D
Bisabolene biosynthesis C19749
C16775
C16814
C19748
alpha-Bisabolene
beta-Bisabolene
(Z)-gamma-Bisabolene
(E)-gamma-Bisabolene
Humulene biosynthesis C09684
C16829
alpha-Humulene
gamma-Humulene
Cadinene biosynthesis C06394 delta-Cadinene
Hopane biosynthesis C06309
C06310
Hopan-22-ol
Hop-22(29)-ene
Triterpenoid
00904 Gibberellin biosynthesis M00927
M00928
M00929
C00859
C01699
C11864
Gibberellin A1
Gibberellin A3
Gibberellin A4
Plant hormone
Labdane biosynthesis C09183
C18224
Sclareol
Stemod-13(17)-ene
Diterpenoid
Abietate biosynthesis C06087 Abietate
Paclitaxel biosynthesis C11900
C07394
Baccatin III
Paclitaxel
Taxol, diterpenoid
00906 alpha-Carotene biosynthesis C05433 alpha-Carotene Provitamin A carotenoid
beta-Carotene biosynthesis M00097 C02094 beta-Carotene
Spirilloxanthin biosynthesis C15881
C15888
Spirilloxanthin
Tetrahydrospirilloxanthin
Carotenoid
Spheroidene biosynthesis C15900
C15903
Spheroidene
Spheroidenone
Okenone biosynthesis C16280 Okenone
Bacterioruberin biosynthesis C22349 Bacterioruberin
Astaxanthin biosynthesis C08580 Astaxanthin
Myxoxanthophyll biosynthesis C15937 (3R,2'S)-Myxol 2’-(2,4-di-O-methyl-alpha-L-fucoside) Carotenoid glycoside
Xanthophyll cycle C06098
C08579
C08614
Zeaxanthin
Antheraxanthin
Violaxanthin
Xanthophyll
Lutein biosynthesis C08601 Lutein
Neurosporaxanthin bisynthesis C08607 Neurosporaxanthin
Diapocarotene biosynthesis C16148 Staphyloxanthin
Abscisic acid biosynthesis M00372 C06082 Abscisic acid Plant hormone
00905 Brassinosteroid biosynthesis M00371 C15794
C08814
Castasterone
Brassinolide
Plant hormone
00981 Juvenile hormone biosynthesis C09694 Juvenile hormone III Insect hormone
Ecdysone biosynthesis C00477 Ecdysone
00908 Zeatin biosynthesis C00371
C15545
trans-Zeatin
cis-Zeatin
Plant hormone
00522 Tylosin biosynthesis M00773 C01457 Tylosin Macrolide antibiotic
Mycinamicin biosynthesis M00934 C15680 Mycinamicin II
Erythromycin biosynthesis M00774 C01912
C06653
Erythromycin A
Erythromycin B
Oleandomycin biosynthesis M00775 C01946 Oleandomycin
Pikromycin/methymycin biosynthesis M00776 C11999 Pikromycin
Avermectin biosynthesis M00777 C11984 Avermectin A1a Macrolide pesticide
01051 Rifamycin biosynthesis C12044 Rifamycin SV Ansamycin antibiotic
Ansamitocin biosynthesis C12045 Ansamitocin P-3 Ansamycin antitumor antibiotic
01059 9-membered enediyne biosynthesis M00824 C11438
C12049
C21301
C-1027
Neocarzinostatin
Kedarcidin
Enediyne antitumor antibiotic
10-membered enediyne biosynthesis M00825
M00833
C11469 Calicheamicin gamma(1)I
01057
00253
Benzoisochromanequinone biosynthesis M00779 C06691
C12437
C06799
Actinorhodin
Medermycin
Granaticin
Aromatic polyketide
Tetracycline biosynthesis M00778
M00780
M00823
C06570
C06571
C06624
Tetracycline
Chlortetracycline
Oxytetracycline
Angucycline biosynthesis C18685
C18822
C12413
C18680
C12395
Landomycin E
Landomycin A
Urdamycin A
Jadomycin A
Jadomycin B
Anthracycline biosynthesis M00781 C01907
C01661
C18638
C18642
C18633
Daunorubicin
Doxorubicin
Aclacinomycin A
Rhodomycin B
Nogalamycin
Mithramycin biosynthesis M00782 C12389 Mithramycin
Tetracenomycin biosynthesis M00783
M00784
C06801
C12380
C12381
Tetracenomycin C
Tetracenomycin X
Elloramycin A
01053 Enterobactin biosynthesis C05821 Enterobactin Siderophore
Vibriobactin biosynthesis C06769 Vibriobactin
Yersiniabactin biosynthesis C12038 Yersiniabactin
Petrobactin biosynthesis C22273 Petrobactin
01055 Vancomycin biosynthesis C06689 Vancomycin Glycopeptide antibiotic
Chloroeremomycin biosynthesis C12014 Chloroeremomycin
00940 Monolignol biosynthesis M00039 C02646
C00590
C02325
4-Coumaryl alcohol
Coniferyl alcohol
Sinapyl alcohol
Monolignol
00940
00941
Flavanone biosynthesis M00940
M00137
C09827
C09762
C09616
C00509
C05631
C05911
Pinocembrin
Liquiritigenin
Butrin
Naringenin
Eriodictyol
Pentahydroxyflavanone
Flavanone
00941
00944
Flavone biosynthesis C01477
C01514
Apigenin
Luteolin
Flavone
Flavonol biosynthesis C05903
C00389
C11620
Kaempferol
Quercetin
Syringetin
Flavonol
00941
00942
Anthocyanin biosynthesis M00138 C05904
C05905
C05908
Pelargonidin
Cyanidin
Delphinidin
Anthocyanidin/anthocyanin
00943 Isoflavonoid biosynthesis M00941 C10208
C06563
Daidzein
Genistein
Isoflavonoid
Pterocarpan biosynthesis M00942 C10503 Medicarpin Pterocarpan
00945 Stilbenoid biosynthesis C03582
C10287
C01745
Resveratrol
Pterostilbene
Pinosylvin
Stilbenoid
Diarylheptanoid biosynthesis C10443 Curcumin Diarylheptanoid
Gingerol biosynthesis C10462 6-Gingerol Gingerol, pungent
00901 Psilocybin biosynthesis M00962 C07576
C08312
Psilocybin
Psilocin
Indole alkaloid
Ergot alkaloid biosynthesis M00963
M00964
C07544
C20436
C20437
C20438
Ergotamine
Fumigaclavine A
Fumigaclavine B
Fumigaclavine C
Monoterpene indole alkaloid biosynthesis M00981
M00979
M00980
M00965
C02151 (19E)-Geissoschizine
C06542
C02074
C09239
Ajmaline
Raucaffricine
Sarpagine
C06522
C22926
C09084
Strychnine
Diaboline
Brucine
C01626
C07201
C07204
Vindoline
Vinblastine
Vincristine
00403 Indole diterpene alkaloid biosynthesis M00661 C20530
C20555
C20550
C20551
Paspaline
Aflatrem
Lolitrem E
Lolitrem B
Indole diterpene alkaloid
00950 Isoquinoline alkaloid biosynthesis M00943
M00944
M00945
M00946
C02105
C01516
C06162
C09592
Reticuline
Morphine
Sanguinarine
Noscapine
Isoquinoline alkaloid
00960 Tropane alkaloid biosynthesis C01851
C01416
Scopolamine
Cocaine
Tropane alkaloid
Piperidine alkaloid biosynthesis C03882
C10171
C07475
Piperine
(-)-Sedamine
Lobeline
Piperidine alkaloid
Pyridine alkaloid biosynthesis C06524
C01004
C10126
Nornicotine
Trigonelline
Anatabine
Pyridine alkaloid
Quinolizidine alkaloid biosynthesis C10773 Lupinine Quinolizidine alkaloid
Indolizidine alkaloid biosynthesis C06185
C10173
Slaframine
Swainsonine
Indolizidine alkaloid
Pyrrolizidine alkaloid biosynthesis C15612 Senecionine N-oxide Pyrrolizidine alkaloid
Pyrrolidine alkaloid biosynthesis C01679
C06521
Hygrine
Cuscohygrine
Pyrrolidine alkaloid
00965 Betalain biosynthesis M00961 C08540 Betanin Betacyanin
C08557 Miraxanthin-V Betaxanthin
00966 Glucosinolate biosynthesis M00370 C05837 Glucobrassicin
00402 Benzoxazinoid to be removed
00311 Penicillin biosynthesis M00672 C00395 Penicillin beta-Lactam antibiotic
Cephalosporin biosynthesis M00673 C06566 Cephamycin C
00332 Carbapenem biosynthesis M00675 C06669 Carbapenem-3-carboxylate
00261 Monobctam biosynthesis M00736 C01941 Nocardicin A
00331 Clavaminic acid biosynthesis M00674 C06660 Clavaminic acid
00521 Streptomycin biosynthesis M00793 C00413 Streptomycin Aminoglycoside antibiotic
00524 Kanamycin biosynthesis C01822
C00825
C01823
Kanamycin A
Kanamycin B
Kanamycin C
Neomycin biosynthesis C01441
C01737
C15652
Neomycin A
Neomycin B
Neomycin C
Gentamicin biosynthesis C07656
C00908
C02033
C17706
Gentamicin C1
Gentamicin C1a
Gentamicin C2
Gentamicin C2b
Paromomycin biosynthesis C00832 Paromomycin Aminoglycoside antibiotic, antiparasitic
00525 Acarbose biosynthesis M00814 C06802 Acarbose C7N-aminocyclitol, antidiabetic drug
Validamycin biosynthesis M00815 C12112
C21293
Validamycin A
Validamycin B
C7N-aminocyclitol antibiotic, fungicide
00401 Novobiocin biosynthesis C05080 Novobiocin Aminocoumarin antibiotic
Coumermycin biosynthesis C05073 Coumermycin A1
Clorobiocin biosynthesis C12032 Clorobiocin
00404 Staurosporine biosynthesis M00805 C02079 Staurosporine Indolocarbazole alkaloid, PKC inhibitor
Rebeccamycin biosynthesis M00789 C19701 Rebeccamycin Indolocarbazole alkaloid, antitumor antibiotic
Violacein biosynthesis M00808 C21136 Violacein Bisindole alkaloid
Pyrrolnitrin biosynthesis M00790 C12491 Pyrrolnitrin Pyrrole antibiotic
Fumitremorgin alkaloid biosynthesis M00786 C20564 Fumitremorgin A Mycotoxin
Meleagrin biosynthesis C22168 Meleagrin
00405 Phenazine biosynthesis C21476 Phenazine Phenazine
Pyocyanine biosynthesis M00835 C01748 Pyocyanine
PQS biosynthesis C11848
C20643
2-Heptyl-3-hydroxy-quinolone
2-Heptyl-4-quinolone
Quinolone
00333 Prodigiosin biosynthesis M00837 C21565 Prodigiosin Tripyrrole antibiotic
Undecylprodigiosin biosynthesis M00838 C12023 Undecylprodigiosin
00254 Aflatoxin biosynthesis M00937 C06800 Aflatoxin B1 Mycotoxin
00996 Cucurbitacin biosynthesis C08794
C08795
C08797
Cucurbitacin B
Cucurbitacin C
Cucurbitacin E
Triterpenoid
Solanine and tomatine biosynthesis C10820
C10827
Solanine
Tomatine
Steroid alkaloid
Ephedrine biosynthesis C01575
C02765
Ephedrine
Pseudoephedrine
Phenethylamine alkaloid
Capsaicin biosynthesis C06866 Capsaicin Capsaicinoid/vanilloid, highly pungent
C00755 Vanillin Vanilloid, vanilla flavoring
Acridone alkaloid biosynthesis C10632
C10722
C10738
Acronycine
Melicopicine
Rutacridone
Acridone alkaloid
(Quinoline alkaloid) C01897
C11379
C06528
Camptothecin
Cinchonidine
Cinchonine
Quinoline alkaloid
00998 Kanosamine biosynthesis M00877 C12212 Kanosamine Aminosugar antibiotic
Aurachin biosynthesis M00848 C21875
C21140
C21330
C10641
Aurachin A
Aurachin B
Aurachin C
Aurachin D
Quinoline antibiotic
Bacilysin biosynthesis M00787 C20942 Bacilysin Dapdiamide antibiotic
Dapdiamides biosynthesis M00904 C20962
C20963
C20964
Dapdiamide A
Dapdiamide B
Dapdiamide C
Puromycin biosynthesis M00889 C01610 Puromycin Aminonucleoside antibiotic
Fosfomycin biosynthesis M00903 C06454 Fosfomycin Phosphonate antibiotic
Cremeomycin biosynthesis M00951 C22416 Cremeomycin ortho-Diazoquinone, cytotoxic antibiotic
Fumagillin biosynthesis M00969 C09668 Fumagillin Meroterpenoid antibiotic
Pentalenolactone biosynthesis M00819 C20407 Pentalenolactone Sesquiterpenoid antibiotic
Terpentecin biosynthesis M00788 C21093 Terpentecin Diterpenoid antibiotic
Roseoflavin biosynthesis M00890 C21647 Roseoflavin Riboflavin analogue
Cycloserine biosynthesis M00785 C08057 Cycloserine Alanine analogue antibiotic
00999 Crocin biosynthesis M00900 C08589
C08588
Crocin
Crocetin
Apocarotenoid
Ginsenoside biosynthesis C20713
C08946
Ginsenoside Rb1
Ginsenoside Rg1
Triterpene saponin
Saponin adjuvant biosynthesis M00971 C22666 QS-7
Cannabidiol biosynthesis M00894 C07578
C06972
Cannabidiol
Dronabinol
Cannabinoid
Mugineic acid biosynthesis M00953 C15500 Mugineic acid Phytosiderophore
Pentagalloylglucose biosynthesis C04576 Pentagalloylglucose Gallotannin/ellagitannin precursor
Benzoxazinoid biosynthesis M00952 C15770
C15772
C04831
DIBOA
DIBOA-glucoside
DIMBOA-glucoside
Benzoxazinoid, plant antibiotic, defense compound
Gramine biosynthesis C08304 Gramine Indole alkaloid
Coumarin biosynthesis C05851 Coumarin Coumarin
Furanocoumarin biosynthesis C09315
C09305
C22152
Umbelliferone
Psoralen
Bergamottin
Furanocoumarin
Hordatine biosynthesis C08307
C08308
Hordatine A
Hordatine B
Hordatine, defense compound
Podophyllotoxin biosynthesis M00902 C10874 Podophyllotoxin Lignan
00997 Ditryptophenaline biosynthesis M00891 C22144 (-)-Ditryptophenaline Indole alkaloid
Fumiquinazoline D biosynthesis M00901 C22149 Fumiquinazoline D Mycotoxin
Paerucumarin biosynthesis C22449 Paerucumarin Coumarin
Staphyloferrin A biosynthesis M00876 C22102 Staphyloferrin A Siderophore
Staphyloferrin B biosynthesis M00875 C22075 Staphyloferrin B
Aerobactin biosynthesis M00918 C05554 Aerobactin
Cyclooctatin biosynthesis M00921 C21979 Cyclooctatin Diterpenoid, lysophospholipase inhibitor
Lovastatin biosynthesis M00893 C21130 Lovastatin acid Fungal polyketide
Grixazone biosynthesis M00905 C20799 Grixazone B Grixazone, yellow pigment
Ethynylserine biosynthesis M00906 C22141 L-β-Ethynylserine Non-proteinogenic amino acid


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Last updated: September 5, 2024