Metabolic pathways - Serratia inhibens
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Q5A_016895
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Module
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Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00001
Glycolysis (Embden-Meyerhof pathway)
M00002
Glycolysis, core module involving three-carbon compounds
M00003
Gluconeogenesis
M00307
Pyruvate oxidation
M00009
Citrate cycle (TCA cycle, Krebs cycle)
M00010
Citrate cycle, first carbon oxidation
M00011
Citrate cycle, second carbon oxidation
M00004
Pentose phosphate pathway (Pentose phosphate cycle)
M00006
Pentose phosphate pathway, oxidative phase
M00007
Pentose phosphate pathway, non-oxidative phase
M00580
Pentose phosphate pathway, archaea
M00005
PRPP biosynthesis
M00008
Entner-Doudoroff pathway
M00308
Semi-phosphorylative Entner-Doudoroff pathway
M00633
Semi-phosphorylative Entner-Doudoroff pathway
M00309
Non-phosphorylative Entner-Doudoroff pathway
Other carbohydrate metabolism
M00014
Glucuronate pathway (uronate pathway)
M00630
D-Galacturonate degradation (fungi)
M00631
D-Galacturonate degradation (bacteria)
M00061
D-Glucuronate degradation
M00081
Pectin degradation
M00632
Galactose degradation, Leloir pathway
M00552
D-galactonate degradation, De Ley-Doudoroff pathway
M00129
Ascorbate biosynthesis, animals
M00114
Ascorbate biosynthesis, plants
M00550
Ascorbate degradation
M00854
Glycogen biosynthesis
M00855
Glycogen degradation
M00565
Trehalose biosynthesis
M00012
Glyoxylate cycle
M00373
Ethylmalonyl pathway
M00740
Methylaspartate cycle
M00532
Photorespiration
M00013
Malonate semialdehyde pathway
M00741
Propanoyl-CoA metabolism
M00982
Methylcitrate cycle
M00968
Pentose bisphosphate pathway (nucleoside degradation), archaea
M00130
Inositol phosphate metabolism
M00131
Inositol phosphate metabolism
M00132
Inositol phosphate metabolism
Energy metabolism
Carbon fixation
M00165
Reductive pentose phosphate cycle (Calvin cycle)
M00168
CAM (Crassulacean acid metabolism), dark
M00169
CAM (Crassulacean acid metabolism), light
M00172
C4-dicarboxylic acid cycle, NADP - malic enzyme type
M00171
C4-dicarboxylic acid cycle, NAD - malic enzyme type
M00170
C4-dicarboxylic acid cycle, phosphoenolpyruvate carboxykinase type
M00173
Reductive citrate cycle (Arnon-Buchanan cycle)
M00376
3-Hydroxypropionate bi-cycle
M00375
Hydroxypropionate-hydroxybutylate cycle
M00374
Dicarboxylate-hydroxybutyrate cycle
M00377
Reductive acetyl-CoA pathway (Wood-Ljungdahl pathway)
M00579
Phosphate acetyltransferase-acetate kinase pathway
M00620
Incomplete reductive citrate cycle
Methane metabolism
M00567
Methanogenesis
M00357
Methanogenesis
M00356
Methanogenesis
M00563
Methanogenesis
M00358
Coenzyme M biosynthesis
M00608
2-Oxocarboxylic acid chain extension
M00174
Methane oxidation, methanotroph
M00346
Formaldehyde assimilation, serine pathway
M00345
Formaldehyde assimilation, ribulose monophosphate pathway
M00344
Formaldehyde assimilation, xylulose monophosphate pathway
M00378
F420 biosynthesis, archaea
M00935
Methanofuran biosynthesis
M00422
Acetyl-CoA pathway
Nitrogen metabolism
M00175
Nitrogen fixation
M00531
Assimilatory nitrate reduction
M00530
Dissimilatory nitrate reduction
M00529
Denitrification
M00528
Nitrification
M00804
Complete nitrification, comammox
M00973
Anammox
Sulfur metabolism
M00987
Assimilatory sulfate reduction, plants
M00176
Assimilatory sulfate reduction
M00596
Dissimilatory sulfate reduction
M00595
Sulfur oxidation, SOX system
M00984
Sulfur oxidation, tetrathionate intermediate (S4I) pathway
M00986
Sulfur reduction
M00985
Sulfide oxidation
M00990
Dimethylsulfoniopropionate (DMSP) degradation, demethylation pathway
M00991
Dimethylsulfoniopropionate (DMSP) degradation, cleavage pathway
M00992
Dimethylsulfoniopropionate (DMSP) degradation, cleavage pathway
M00993
Dimethylsulfoniopropionate (DMSP) degradation, cleavage pathway
Photosynthesis
M00161
Photosystem II
M00163
Photosystem I
ATP synthesis
M00144
NADH:quinone oxidoreductase, prokaryotes
M00145
NAD(P)H:quinone oxidoreductase, chloroplasts and cyanobacteria
M00142
NADH:ubiquinone oxidoreductase, mitochondria
M00143
NADH dehydrogenase (ubiquinone) Fe-S protein/flavoprotein complex, mitochondria
M00146
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex
M00147
NADH dehydrogenase (ubiquinone) 1 beta subcomplex
M00149
Succinate dehydrogenase, prokaryotes
M00150
Fumarate reductase, prokaryotes
M00148
Succinate dehydrogenase (ubiquinone)
M00162
Cytochrome b6f complex
M00151
Cytochrome bc1 complex respiratory unit
M00152
Cytochrome bc1 complex
M00154
Cytochrome c oxidase
M00155
Cytochrome c oxidase, prokaryotes
M00153
Cytochrome bd ubiquinol oxidase
M00417
Cytochrome o ubiquinol oxidase
M00416
Cytochrome aa3-600 menaquinol oxidase
M00156
Cytochrome c oxidase, cbb3-type
M00157
F-type ATPase, prokaryotes and chloroplasts
M00159
V/A-type ATPase, prokaryotes
Lipid metabolism
Fatty acid metabolism
M00082
Fatty acid biosynthesis, initiation
M00083
Fatty acid biosynthesis, elongation
M00873
Fatty acid biosynthesis in mitochondria, animals
M00874
Fatty acid biosynthesis in mitochondria, fungi
M00085
Fatty acid elongation in mitochondria
M00415
Fatty acid elongation in endoplasmic reticulum
M00086
beta-Oxidation, acyl-CoA synthesis
M00087
beta-Oxidation
M00861
beta-Oxidation, peroxisome, VLCFA
Sterol biosynthesis
M00101
Cholesterol biosynthesis
M00102
Ergocalciferol biosynthesis
M00917
Phytosterol biosynthesis
M00103
Cholecalciferol biosynthesis
M00104
Bile acid biosynthesis
M00106
Conjugated bile acid biosynthesis
M00862
beta-Oxidation, peroxisome
M00107
Steroid hormone biosynthesis
M00108
C21-Steroid hormone biosynthesis
M00109
C21-Steroid hormone biosynthesis
M00110
C19/C18-Steroid hormone biosynthesis
M00976
C19-Steroid hormone biosynthesis
M00977
C19-Steroid hormone biosynthesis (androgen backdoor pathway)
Lipid metabolism
M00088
Ketone body biosynthesis
M00089
Triacylglycerol biosynthesis
M00098
Acylglycerol degradation
M00090
Phosphatidylcholine (PC) biosynthesis
M00091
Phosphatidylcholine (PC) biosynthesis
M00092
Phosphatidylethanolamine (PE) biosynthesis
M00093
Phosphatidylethanolamine (PE) biosynthesis
M00094
Ceramide biosynthesis
M00066
Lactosylceramide biosynthesis
M00067
Sulfoglycolipids biosynthesis
M00099
Sphingosine biosynthesis
M00100
Sphingosine degradation
M00113
Jasmonic acid biosynthesis
Nucleotide metabolism
Purine metabolism
M00048
De novo purine biosynthesis
M00049
Adenine ribonucleotide biosynthesis
M00050
Guanine ribonucleotide biosynthesis
M00053
Deoxyribonucleotide biosynthesis
M00958
Adenine ribonucleotide degradation
M00959
Guanine ribonucleotide degradation
M00546
Purine degradation
Pyrimidine metabolism
M00051
De novo pyrimidine biosynthesis
M00052
Pyrimidine ribonucleotide biosynthesis
M00938
Pyrimidine deoxyribonucleotide biosynthesis
M00046
Pyrimidine degradation
M00939
Pyrimidine degradation
Amino acid metabolism
Serine and threonine metabolism
M00020
Serine biosynthesis
M00018
Threonine biosynthesis
M00621
Glycine cleavage system
M00555
Betaine biosynthesis
M00974
Betaine metabolism, animals
M00975
Betaine degradation, bacteria
M00033
Ectoine biosynthesis
M00919
Ectoine degradation
Cysteine and methionine metabolism
M00021
Cysteine biosynthesis
M00338
Cysteine biosynthesis
M00609
Cysteine biosynthesis
M00017
Methionine biosynthesis
M00034
Methionine salvage pathway
M00035
Methionine degradation
M00368
Ethylene biosynthesis
Branched-chain amino acid metabolism
M00019
Valine/isoleucine biosynthesis
M00535
Isoleucine biosynthesis
M00570
Isoleucine biosynthesis
M00432
Leucine biosynthesis
M00036
Leucine degradation
Lysine metabolism
M00016
Lysine biosynthesis, succinyl-DAP pathway
M00525
Lysine biosynthesis, acetyl-DAP pathway
M00526
Lysine biosynthesis, DAP dehydrogenase pathway
M00527
Lysine biosynthesis, DAP aminotransferase pathway
M00030
Lysine biosynthesis, AAA pathway
M00433
Lysine biosynthesis
M00031
Lysine biosynthesis, mediated by LysW
M00032
Lysine degradation
M00956
Lysine degradation, bacteria
M00957
Lysine degradation, bacteria
M00960
Lysine degradation, bacteria
Arginine and proline metabolism
M00028
Ornithine biosynthesis
M00763
Ornithine biosynthesis, mediated by LysW
M00844
Arginine biosynthesis
M00845
Arginine biosynthesis
M00029
Urea cycle
M00978
Ornithine-ammonia cycle
M00015
Proline biosynthesis
M00970
Proline degradation
M00972
Proline metabolism
M00047
Creatine pathway
M00879
Arginine succinyltransferase pathway
Polyamine biosynthesis
M00133
Polyamine biosynthesis
M00134
Polyamine biosynthesis
M00135
GABA biosynthesis, eukaryotes
M00136
GABA biosynthesis, prokaryotes
Histidine metabolism
M00026
Histidine biosynthesis
M00045
Histidine degradation
Aromatic amino acid metabolism
M00022
Shikimate pathway
M00023
Tryptophan biosynthesis
M00024
Phenylalanine biosynthesis
M00910
Phenylalanine biosynthesis
M00025
Tyrosine biosynthesis
M00040
Tyrosine biosynthesis
M00042
Catecholamine biosynthesis
M00043
Thyroid hormone biosynthesis
M00044
Tyrosine degradation
M00533
Homoprotocatechuate degradation
M00037
Melatonin biosynthesis, animals
M00936
Melatonin biosynthesis, plants
M00038
Tryptophan metabolism
Other amino acid metabolism
M00027
GABA (gamma-Aminobutyrate) shunt
M00369
Cyanogenic glycoside biosynthesis
M00118
Glutathione biosynthesis
M00947
D-Arginine racemization
M00948
Hydroxyproline degradation
M00949
Staphylopine biosynthesis
Glycan metabolism
Nucleotide sugar biosynthesis
M00549
Nucleotide sugar biosynthesis
M00554
Nucleotide sugar biosynthesis
M00909
UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes
M00923
UDP-L-FucNAm biosynthesis
M00922
CMP-Neu5Ac biosynthesis, bacteria
M00063
CMP-3-deoxy-D-manno-octulosonate biosynthesis
M00064
ADP-L-glycero-D-manno-heptose biosynthesis
M00761
Undecaprenylphosphate alpha-L-Ara4N biosynthesis
M00793
dTDP-L-rhamnose biosynthesis
Glycan biosynthesis
M00055
N-glycan precursor biosynthesis
M00072
N-glycosylation by oligosaccharyltransferase
M00073
N-glycan precursor trimming
M00074
N-glycan biosynthesis, high-mannose type
M00075
N-glycan biosynthesis, complex type
M00056
O-glycan biosynthesis, mucin type core
M00872
O-glycan biosynthesis, mannose type (core M3)
M00065
GPI-anchor biosynthesis, core oligosaccharide
M00983
GPI-anchor remodeling
M00070
Glycosphingolipid biosynthesis, lacto-series
M00071
Glycosphingolipid biosynthesis, neolacto-series
M00068
Glycosphingolipid biosynthesis, globo-series
M00069
Glycosphingolipid biosynthesis, ganglio series
Glycosaminoglycan metabolism
M00057
Glycosaminoglycan biosynthesis, linkage tetrasaccharide
M00058
Glycosaminoglycan biosynthesis, chondroitin sulfate backbone
M00059
Glycosaminoglycan biosynthesis, heparan sulfate backbone
M00076
Dermatan sulfate degradation
M00077
Chondroitin sulfate degradation
M00078
Heparan sulfate degradation
M00079
Keratan sulfate degradation
Lipopolysaccharide metabolism
M00060
KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type
M00866
KDO2-lipid A biosynthesis, Raetz pathway, non-LpxL-LpxM type
M00867
KDO2-lipid A modification pathway
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00127
Thiamine biosynthesis, prokaryotes
M00895
Thiamine biosynthesis, prokaryotes
M00896
Thiamine biosynthesis, archaea
M00897
Thiamine biosynthesis, plants
M00898
Thiamine biosynthesis
M00899
Thiamine salvage pathway
M00125
Riboflavin biosynthesis, plants and bacteria
M00911
Riboflavin biosynthesis, fungi
M00124
Pyridoxal-P biosynthesis
M00916
Pyridoxal-P biosynthesis
M00115
NAD biosynthesis
M00912
NAD biosynthesis
M00810
Nicotine degradation, pyridine pathway
M00811
Nicotine degradation, pyrrolidine pathway
M00622
Nicotinate degradation
M00119
Pantothenate biosynthesis
M00913
Pantothenate biosynthesis
M00120
Coenzyme A biosynthesis
M00914
Coenzyme A biosynthesis, archaea
M00572
Pimeloyl-ACP biosynthesis, BioC-BioH pathway
M00123
Biotin biosynthesis
M00950
Biotin biosynthesis, BioU pathway
M00573
Biotin biosynthesis, BioI pathway
M00577
Biotin biosynthesis, BioW pathway
M00881
Lipoic acid biosynthesis, plants and bacteria
M00882
Lipoic acid biosynthesis, eukaryotes
M00883
Lipoic acid biosynthesis, animals and bacteria
M00884
Lipoic acid biosynthesis
M00126
Tetrahydrofolate biosynthesis
M00840
Tetrahydrofolate biosynthesis, mediated by ribA and trpF
M00841
Tetrahydrofolate biosynthesis, mediated by PTPS
M00842
Tetrahydrobiopterin biosynthesis
M00843
L-threo-Tetrahydrobiopterin biosynthesis
M00880
Molybdenum cofactor biosynthesis
M00988
PreQ1 biosynthesis
M00140
C1-unit interconversion, prokaryotes
M00846
Siroheme biosynthesis
M00868
Heme biosynthesis, animals and fungi
M00121
Heme biosynthesis, plants and bacteria
M00926
Heme biosynthesis, bacteria
M00847
Heme biosynthesis, archaea
M00924
Cobalamin biosynthesis, anaerobic
M00925
Cobalamin biosynthesis, aerobic
M00122
Cobalamin biosynthesis
M00836
Coenzyme F430 biosynthesis
M00117
Ubiquinone biosynthesis, prokaryotes
M00989
Ubiquinone biosynthesis, O2-independent, prokaryotes
M00128
Ubiquinone biosynthesis, eukaryotes
M00116
Menaquinone biosynthesis
M00930
Menaquinone biosynthesis, futalosine pathway
M00931
Menaquinone biosynthesis, modified futalosine pathway
M00932
Phylloquinone biosynthesis
M00112
Tocopherol/tocotorienol biosynthesis
M00933
Plastoquinone biosynthesis
Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
M00095
C5 isoprenoid biosynthesis, mevalonate pathway
M00849
C5 isoprenoid biosynthesis, mevalonate pathway, archaea
M00096
C5 isoprenoid biosynthesis, non-mevalonate pathway
M00364
C10-C20 isoprenoid biosynthesis, bacteria
Plant terpenoid biosynthesis
M00097
beta-Carotene biosynthesis
M00372
Abscisic acid biosynthesis
M00371
Castasterone biosynthesis
M00927
Gibberellin A12 biosynthesis
M00928
Gibberellin A4/A1 biosynthesis
M00929
Gibberellin A1 biosynthesis
Macrolide biosynthesis
M00773
Tylosin biosynthesis
M00934
Mycinamicin biosynthesis
M00774
Erythromycin biosynthesis
M00775
Oleandomycin biosynthesis
M00776
Pikromycin/methymycin biosynthesis
M00777
Avermectin biosynthesis
Enediyne biosynthesis
M00824
9-membered enediyne core biosynthesis
M00825
10-membered enediyne core biosynthesis
M00826
C-1027 benzoxazolinate moiety biosynthesis
M00827
C-1027 beta-amino acid moiety biosynthesis
M00828
Maduropeptin beta-hydroxy acid moiety biosynthesis
M00829
3,6-Dimethylsalicylyl-CoA biosynthesis
M00830
Neocarzinostatin naphthoate moiety biosynthesis
M00831
Kedarcidin 2-hydroxynaphthoate moiety biosynthesis
M00832
Kedarcidin 2-aza-3-chloro-beta-tyrosine moiety biosynthesis
M00834
Calicheamicin orsellinate moiety biosynthesis
M00833
Calicheamicin biosynthesis
Type II polyketide biosynthesis
M00778
Type II polyketide backbone biosynthesis
M00779
Dihydrokalafungin biosynthesis
M00780
Tetracycline/oxytetracycline biosynthesis
M00823
Chlortetracycline biosynthesis
M00781
Nogalavinone/aklavinone biosynthesis
M00782
Mithramycin biosynthesis
M00783
Tetracenomycin C/8-demethyltetracenomycin C biosynthesis
M00784
Elloramycin biosynthesis
Polyketide sugar unit biosynthesis
M00794
dTDP-6-deoxy-D-allose biosynthesis
M00795
dTDP-beta-L-noviose biosynthesis
M00796
dTDP-D-mycaminose biosynthesis
M00797
dTDP-D-desosamine biosynthesis
M00798
dTDP-L-mycarose biosynthesis
M00799
dTDP-L-oleandrose biosynthesis
M00800
dTDP-L-megosamine biosynthesis
M00801
dTDP-L-olivose biosynthesis
M00802
dTDP-D-forosamine biosynthesis
M00803
dTDP-D-angolosamine biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
M00039
Monolignol biosynthesis
M00137
Flavanone biosynthesis
M00940
Flavanone biosynthesis
M00138
Flavonoid biosynthesis
M00941
Isoflavone biosynthesis
M00942
Pterocarpan biosynthesis
M00966
Equol biosynthesis
M00967
Flavone degradation
M00962
Psilocybin biosynthesis
M00963
Chanoclavine aldehyde biosynthesis
M00964
Fumigaclavine biosynthesis
M00981
Geissoschizine biosynthesis
M00979
Ajmaline biosynthesis
M00980
Strychnine biosynthesis
M00965
Vinblastine biosynthesis
M00943
Reticuline biosynthesis
M00944
Morphine biosynthesis
M00945
Sanguinarine biosynthesis
M00946
Noscapine biosynthesis
M00961
Betacyanin biosynthesis
M00370
Glucosinolate biosynthesis
M00900
Crocin biosynthesis
M00971
QS-7 biosynthesis
M00894
Cannabidiol biosynthesis
M00953
Mugineic acid biosynthesis
M00952
Benzoxazinoid biosynthesis
M00902
Podophyllotoxin biosynthesis
Biosynthesis of beta-lactams
M00672
Penicillin biosynthesis
M00673
Cephamycin C biosynthesis
M00675
Carbapenem-3-carboxylate biosynthesis
M00736
Nocardicin A biosynthesis
M00674
Clavaminate biosynthesis
Biosynthesis of other antibiotics
M00877
Kanosamine biosynthesis
M00889
Puromycin biosynthesis
M00815
Validamycin A biosynthesis
M00904
Dapdiamides biosynthesis
M00787
Bacilysin biosynthesis
M00785
Cycloserine biosynthesis
M00848
Aurachin biosynthesis
M00788
Terpentecin biosynthesis
M00819
Pentalenolactone biosynthesis
M00903
Fosfomycin biosynthesis
M00890
Roseoflavin biosynthesis
M00951
Cremeomycin biosynthesis
M00969
Fumagillin biosynthesis
Biosynthesis of other fungal compounds
M00661
Paspaline biosynthesis
M00786
Fumitremorgin alkaloid biosynthesis
M00937
Aflatoxin biosynthesis
M00893
Lovastatin biosynthesis
M00891
Ditryptophenaline biosynthesis
M00901
Fumiquinazoline biosynthesis
Biosynthesis of other bacterial compounds
M00814
Acarbose biosynthesis
M00789
Rebeccamycin biosynthesis
M00790
Pyrrolnitrin biosynthesis
M00805
Staurosporine biosynthesis
M00808
Violacein biosynthesis
M00835
Pyocyanine biosynthesis
M00837
Prodigiosin biosynthesis
M00838
Undecylprodigiosin biosynthesis
M00921
Cyclooctatin biosynthesis
M00905
Grixazone biosynthesis
M00876
Staphyloferrin A biosynthesis
M00875
Staphyloferrin B biosynthesis
M00918
Aerobactin biosynthesis
M00906
Ethynylserine biosynthesis
Xenobiotics biodegradation
Aromatics degradation
M00538
Toluene degradation
M00537
Xylene degradation
M00419
Cymene degradation
M00547
Benzene/toluene degradation
M00548
Benzene degradation
M00551
Benzoate degradation
M00637
Anthranilate degradation
M00568
Catechol ortho-cleavage
M00569
Catechol meta-cleavage
M00539
Cumate degradation
M00543
Biphenyl degradation
M00544
Carbazole degradation
M00418
Toluene degradation, anaerobic
M00541
Benzoyl-CoA degradation
M00540
Benzoate degradation
M00534
Naphthalene degradation
M00638
Salicylate degradation
M00624
Terephthalate degradation
M00623
Phthalate degradation
M00636
Phthalate degradation
M00878
Phenylacetate degradation
M00545
Trans-cinnamate degradation
M00915
Caffeine degradation
KGML
Image (png) file 1x
Metabolic pathways - Serratia inhibens
Metabolic pathways - Serratia inhibens
