| Motif id | From | To | Definition | E value | Score |
| pf:CheB_methylest | 8 | 180 | CheB methylesterase
| 6.6e-41 | - |
| pf:CheR_N | 210 | 254 | CheR methyltransferase, all-alpha domain
| 3.3e-05 | - |
| pf:CheR | 269 | 449 | CheR methyltransferase, SAM binding domain
| 2.5e-47 | - |
| pf:Methyltransf_12 | 316 | 435 | Methyltransferase domain
| 0.048 | - |
| pf:Jnk-SapK_ap_N | 593 | 707 | JNK_SAPK-associated protein-1
| 0.79 | - |
| pf:TSNAXIP1_N | 615 | 710 | Translin-associated factor X-interacting N-terminus
| 0.19 | - |
| pf:Med30 | 620 | 719 | Mediator complex subunit 30
| 0.013 | - |
| pf:Exonuc_VII_L | 620 | 717 | Exonuclease VII, large subunit
| 0.048 | - |
| pf:Taxilin | 621 | 718 | Myosin-like coiled-coil protein
| 0.004 | - |
| pf:FliJ | 621 | 697 | Flagellar FliJ protein
| 0.14 | - |
| pf:Gp58 | 622 | 720 | gp58-like protein
| 0.004 | - |
| pf:CCDC22_CC | 622 | 710 | | 0.33 | - |
| pf:Fez1 | 622 | 716 | Fez1
| 0.51 | - |
| pf:EzrA | 623 | 705 | Septation ring formation regulator, EzrA
| 0.0049 | - |
| pf:IFT57 | 623 | 718 | Intra-flagellar transport protein 57
| 0.0059 | - |
| pf:DUF3584 | 623 | 710 | Protein of unknown function (DUF3584)
| 0.015 | - |
| pf:WEMBL | 624 | 717 | Weak chloroplast movement under blue light
| 0.043 | - |
| pf:ATG16 | 624 | 717 | Autophagy protein 16 (ATG16)
| 0.051 | - |
| pf:Golgin_A5 | 625 | 711 | Golgin subfamily A member 5
| 0.052 | - |
| pf:CENP-F_leu_zip | 625 | 720 | Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
| 0.34 | - |
| pf:OmpH | 625 | 696 | Outer membrane protein (OmpH-like)
| 0.67 | - |
| pf:DUF724 | 629 | 718 | Protein of unknown function (DUF724)
| 0.64 | - |
| pf:Laminin_II | 631 | 719 | Laminin Domain II
| 0.0046 | - |
| pf:Flagellin_N | 632 | 715 | Bacterial flagellin N-terminal helical region
| 0.062 | - |
| pf:HMMR_N | 633 | 717 | Hyaluronan mediated motility receptor N-terminal
| 0.17 | - |
| pf:AAA_13 | 635 | 716 | AAA domain
| 0.11 | - |
| pf:HAP1_N | 637 | 720 | HAP1 N-terminal conserved region
| 0.0059 | - |
| pf:DASH_Duo1 | 638 | 678 | DASH complex subunit Duo1
| 0.67 | - |
| pf:PEARLI-4 | 639 | 718 | Arabidopsis phospholipase-like protein (PEARLI 4)
| 0.19 | - |
| pf:BRE1 | 642 | 720 | BRE1 E3 ubiquitin ligase
| 0.0032 | - |
| pf:PAS | 714 | 819 | PAS fold
| 3.1e-07 | - |
| pf:PAS_10 | 715 | 819 | PAS domain
| 8.5e-21 | - |
| pf:PAS_8 | 715 | 765 | PAS domain
| 0.0001 | - |
| pf:PAS_4 | 720 | 822 | PAS fold
| 1.6e-09 | - |
| pf:PAS_9 | 725 | 820 | PAS domain
| 0.024 | - |
| pf:PAS_7 | 726 | 819 | PAS fold
| 0.63 | - |
| pf:HisKA | 842 | 913 | His Kinase A (phospho-acceptor) domain
| 6.5e-12 | - |
| pf:HATPase_c | 959 | 1070 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
| 4.5e-31 | - |
| pf:HATPase_c_2 | 969 | 1050 | Histidine kinase-like ATPase domain
| 0.037 | - |
| pf:HATPase_c_3 | 992 | 1066 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
| 0.11 | - |
| pf:Response_reg | 1096 | 1208 | Response regulator receiver domain
| 4.6e-17 | - |