| Motif id | From | To | Definition | E value | Score |
| pf:RuvA_N | 1 | 62 | RuvA N terminal domain
| 5.9e-20 | - |
| pf:HHH_5 | 72 | 129 | Helix-hairpin-helix domain
| 1.2e-13 | - |
| pf:RecR_HhH | 112 | 127 | | 0.65 | - |
| pf:HHH | 113 | 125 | Helix-hairpin-helix motif
| 0.28 | - |
| pf:RuvA_C | 157 | 204 | RuvA, C-terminal domain
| 1.2e-12 | - |
| pf:DUF1421 | 163 | 192 | Protein of unknown function (DUF1421)
| 0.26 | - |
| pf:Type_III_YscG | 164 | 198 | Bacterial type II secretion system chaperone protein (type_III_yscG)
| 0.39 | - |