SSDB Motif Search Result


Organism : Brassica oleracea (wild cabbage)
Gene : 106315897
Definition : K12818 ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13] | (RefSeq) putative uncharacterized protein At4g01020, chloroplastic
Motif idFromToDefinitionE valueScore
pf:DEAD300447DEAD/DEAH box helicase 3.7e-05-
pf:RsgA_GTPase303330 0.37-
pf:ABC_tran305333ABC transporter 0.15-
pf:AAA_19306434AAA domain 0.043-
pf:AAA_22308441AAA domain 0.0003-
pf:AAA_30308430AAA domain 0.057-
pf:DUF2075310414Uncharacterized conserved protein (DUF2075) 0.05-
pf:AAA_29310325P-loop containing region of AAA domain 0.18-
pf:Helicase_RecD313449Helicase 0.008-
pf:Helicase_C504620Helicase conserved C-terminal domain 1.6e-14-
pf:HA2682781Helicase associated domain (HA2) 1.4e-07-
pf:OB_NTP_bind846922Oligonucleotide/oligosaccharide-binding (OB)-fold 3e-08-
pf:Secretin_N9761007Bacterial type II/III secretion system short domain 0.34-
pf:KH_114181453KH domain 0.55-
pf:zf-C3HC4_315481580Zinc finger, C3HC4 type (RING finger) 0.0047-
pf:zf-C3HC4_215501583Zinc finger, C3HC4 type (RING finger) 1.3e-06-
pf:zf-RING_215501583Ring finger domain 5.5e-05-
pf:zf-RING_515501580zinc-RING finger domain 0.0012-
pf:zf-RING_UBOX15511581RING-type zinc-finger 1.4e-05-
pf:zf-C3HC415511581Zinc finger, C3HC4 type (RING finger) 1.7e-05-
pf:IBR16231683IBR domain, a half RING-finger domain 3.3e-08-
pf:IBR16971739IBR domain, a half RING-finger domain 0.0037-

boe:106315897 pf:DEAD pf:RsgA_GTPase pf:ABC_tran pf:AAA_19 pf:AAA_22 pf:AAA_30 pf:DUF2075 pf:AAA_29 pf:Helicase_RecD pf:Helicase_C pf:HA2 pf:OB_NTP_bind pf:Secretin_N pf:KH_1 pf:zf-C3HC4_3 pf:zf-C3HC4_2 pf:zf-RING_2 pf:zf-RING_5 pf:zf-RING_UBOX pf:zf-C3HC4 pf:IBR pf:IBR


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