| Motif id | From | To | Definition | E value | Score |
| pf:DNA_ligase_A_N | 288 | 464 | DNA ligase N terminus
| 8.4e-45 | - |
| pf:DDR | 414 | 489 | Diol dehydratase reactivase ATPase-like domain
| 0.29 | - |
| pf:DNA_ligase_A_M | 542 | 746 | ATP dependent DNA ligase domain
| 5e-62 | - |
| pf:PucR | 689 | 727 | Purine catabolism regulatory protein-like family
| 0.22 | - |
| pf:DNA_ligase_A_C | 771 | 882 | ATP dependent DNA ligase C terminal region
| 2.4e-22 | - |