| Motif id | From | To | Definition | E value | Score |
| pf:DnaA_N | 3 | 60 | DnaA N-terminal domain
| 3.7e-10 | - |
| pf:Bac_DnaA | 109 | 323 | Bacterial dnaA protein
| 4.3e-61 | - |
| pf:AAA_19 | 138 | 284 | AAA domain
| 0.28 | - |
| pf:AAA_22 | 143 | 181 | AAA domain
| 1 | - |
| pf:IstB_IS21 | 145 | 215 | IstB-like ATP binding protein
| 0.0037 | - |
| pf:AAA | 146 | 240 | ATPase family associated with various cellular activities (AAA)
| 0.045 | - |
| pf:AAA_assoc_2 | 290 | 341 | AAA C-terminal domain
| 0.13 | - |
| pf:Mis14 | 296 | 367 | Kinetochore protein Mis14 like
| 0.047 | - |
| pf:Bac_DnaA_C | 353 | 418 | Bacterial dnaA protein helix-turn-helix
| 1e-18 | - |