| Motif id | From | To | Definition | E value | Score |
| pf:RecA | 9 | 270 | recA bacterial DNA recombination protein
| 1.1e-142 | - |
| pf:Rad51 | 38 | 228 | Rad51
| 3.9e-09 | - |
| pf:PAXNEB | 40 | 65 | PAXNEB protein
| 0.021 | - |
| pf:DnaB_C | 41 | 109 | DnaB-like helicase C terminal domain
| 0.56 | - |
| pf:ATPase | 42 | 207 | KaiC
| 7.6e-08 | - |
| pf:AAA_16 | 53 | 195 | AAA ATPase domain
| 0.00028 | - |
| pf:AAA_25 | 55 | 152 | AAA domain
| 0.007 | - |
| pf:AAA_35 | 60 | 99 | AAA-like domain
| 0.021 | - |
| pf:ATPase_2 | 61 | 100 | ATPase domain predominantly from Archaea
| 0.0001 | - |
| pf:AAA_22 | 61 | 152 | AAA domain
| 0.0051 | - |
| pf:AAA_14 | 61 | 101 | AAA domain
| 0.074 | - |
| pf:MobB | 62 | 98 | Molybdopterin guanine dinucleotide synthesis protein B
| 0.15 | - |
| pf:TK | 62 | 148 | Thymidine kinase
| 0.12 | - |
| pf:AAA_24 | 63 | 151 | AAA domain
| 1.6e-05 | - |
| pf:AAA | 65 | 190 | ATPase family associated with various cellular activities (AAA)
| 0.12 | - |
| pf:CobU | 65 | 195 | Cobinamide kinase / cobinamide phosphate guanyltransferase
| 0.1 | - |
| pf:AAA_28 | 65 | 79 | AAA domain
| 0.64 | - |
| pf:CbiA | 71 | 193 | CobQ/CobB/MinD/ParA nucleotide binding domain
| 0.016 | - |
| pf:RecA_C | 273 | 328 | | 2.2e-25 | - |