| Motif id | From | To | Definition | E value | Score |
| pf:S1 | 236 | 308 | S1 RNA binding domain
| 1.5e-11 | - |
| pf:TsaE | 539 | 577 | Threonylcarbamoyl adenosine biosynthesis protein TsaE
| 0.14 | - |
| pf:DEAD | 542 | 691 | DEAD/DEAH box helicase
| 4.2e-07 | - |
| pf:PhoH | 542 | 566 | PhoH-like protein
| 0.31 | - |
| pf:nSTAND3 | 543 | 570 | | 0.035 | - |
| pf:T2SSE | 543 | 574 | Type II/IV secretion system protein
| 0.073 | - |
| pf:AAA_16 | 543 | 582 | AAA ATPase domain
| 0.1 | - |
| pf:AAA_19 | 545 | 674 | AAA domain
| 0.0043 | - |
| pf:AAA_7 | 547 | 574 | P-loop containing dynein motor region D3
| 0.44 | - |
| pf:ABC_tran | 548 | 583 | ABC transporter
| 0.63 | - |
| pf:AAA_30 | 548 | 605 | AAA domain
| 0.23 | - |
| pf:AAA_22 | 550 | 685 | AAA domain
| 5.9e-05 | - |
| pf:Flavi_DEAD | 550 | 689 | Flavivirus DEAD domain
| 0.0015 | - |
| pf:Helicase_C | 735 | 865 | Helicase conserved C-terminal domain
| 2.5e-11 | - |
| pf:HA2_N | 927 | 955 | | 3.8e-10 | - |
| pf:HA2_C | 956 | 1015 | | 9.4e-15 | - |
| pf:OB_NTP_bind | 1073 | 1149 | Oligonucleotide/oligosaccharide-binding (OB)-fold
| 1.3e-28 | - |