| Motif id | From | To | Definition | E value | Score |
| pf:DnaA_N | 7 | 68 | DnaA N-terminal domain
| 7.1e-08 | - |
| pf:Bac_DnaA | 158 | 373 | Bacterial dnaA protein
| 3.8e-90 | - |
| pf:TsaE | 185 | 213 | Threonylcarbamoyl adenosine biosynthesis protein TsaE
| 0.33 | - |
| pf:AAA_16 | 187 | 261 | AAA ATPase domain
| 0.083 | - |
| pf:ATPase_2 | 190 | 294 | ATPase domain predominantly from Archaea
| 0.012 | - |
| pf:AAA_14 | 192 | 289 | AAA domain
| 3.5e-05 | - |
| pf:AFG1_ATPase | 192 | 225 | AFG1-like ATPase
| 0.049 | - |
| pf:AAA_19 | 192 | 226 | AAA domain
| 0.6 | - |
| pf:IstB_IS21 | 193 | 296 | IstB-like ATP binding protein
| 2.7e-09 | - |
| pf:AAA_22 | 193 | 284 | AAA domain
| 0.53 | - |
| pf:AAA | 194 | 307 | ATPase family associated with various cellular activities (AAA)
| 0.00014 | - |
| pf:RNA_helicase | 194 | 270 | RNA helicase
| 0.78 | - |
| pf:Bac_DnaA_C | 400 | 467 | Bacterial dnaA protein helix-turn-helix
| 6.8e-27 | - |