| Motif id | From | To | Definition | E value | Score |
| pf:PBP1_TM | 1 | 74 | Transmembrane domain of transglycosylase PBP1 at N-terminal
| 1.2e-25 | - |
| pf:DUF4492 | 56 | 85 | Domain of unknown function (DUF4492)
| 0.49 | - |
| pf:UvrB_inter | 106 | 185 | | 0.0085 | - |
| pf:UB2H | 108 | 192 | Bifunctional transglycosylase second domain
| 8.3e-26 | - |
| pf:Transgly | 204 | 374 | Transglycosylase
| 3.1e-56 | - |
| pf:Transpeptidase | 468 | 710 | Penicillin binding protein transpeptidase domain
| 1.3e-24 | - |
| pf:FtsA_C | 797 | 838 | | 0.015 | - |