| Motif id | From | To | Definition | E value | Score |
| pf:KdpD | 23 | 231 | Osmosensitive K+ channel His kinase sensor domain
| 7.3e-98 | - |
| pf:DUF2478 | 96 | 158 | Protein of unknown function (DUF2478)
| 0.7 | - |
| pf:Usp | 252 | 362 | Universal stress protein family
| 0.0001 | - |
| pf:DUF4118 | 404 | 509 | Domain of unknown function (DUF4118)
| 2.2e-31 | - |
| pf:GAF_3 | 529 | 646 | GAF domain
| 1.6e-12 | - |
| pf:GAF_2 | 600 | 645 | GAF domain
| 0.55 | - |
| pf:HisKA | 666 | 732 | His Kinase A (phospho-acceptor) domain
| 8e-13 | - |
| pf:HATPase_c | 777 | 885 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
| 1.7e-26 | - |
| pf:HATPase_c_2 | 785 | 858 | Histidine kinase-like ATPase domain
| 0.23 | - |