SSDB Motif Search Result


Organism : Staphylococcus saprophyticus
Gene : SSP1504
Definition : K03763 DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] | (GenBank) DNA polymerase III alpha chain PolC-type
Motif idFromToDefinitionE valueScore
pf:DNA_pol3_a_NI879DNA polymerase III polC-type N-terminus I 3.9e-13-
pf:DNA_pol3_a_NII94207DNA polymerase III polC-type N-terminus II 6.9e-17-
pf:DUF6448154205 0.41-
pf:DUF3091174247 0.37-
pf:tRNA_anti-codon242321OB-fold nucleic acid binding domain 3e-05-
pf:PHP338448PHP domain 9e-17-
pf:RNase_T423578Exonuclease 8.5e-44-
pf:RNase_H_2424596RNase_H superfamily 0.0034-
pf:PHP567687PHP domain 3e-13-
pf:DNA_pol3_alpha8241006Bacterial DNA polymerase III alpha subunit 1.3e-43-
pf:DNA_pol3_alpha10201093Bacterial DNA polymerase III alpha subunit 1.1e-13-
pf:DNA_pol3_finger10961241 9e-27-
pf:HHH_613491427Helix-hairpin-helix motif 4.3e-10-
pf:HHH_313771418Helix-hairpin-helix motif 1.3e-07-
pf:T2SSK13781412Type II secretion system (T2SS), protein K 0.0068-

ssp:SSP1504 pf:DNA_pol3_a_NI pf:DNA_pol3_a_NII pf:DUF6448 pf:DUF3091 pf:tRNA_anti-codon pf:PHP pf:RNase_T pf:RNase_H_2 pf:PHP pf:DNA_pol3_alpha pf:DNA_pol3_alpha pf:DNA_pol3_finger pf:HHH_6 pf:HHH_3 pf:T2SSK

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