SSDB Motif Search Result


Organism : Salmonella enterica subsp. enterica serovar Typhimurium LT2
Gene : STM2414
Definition : no KO assigned | (RefSeq) yfeD; hypothetical protein
Motif idFromToDefinitionE valueScore
pf:HTH_59139 0.2-
pf:HTH_3231Helix-turn-helix 0.0013-
pf:HTH_28230Helix-turn-helix domain 0.037-
pf:HTH_Tnp_ISL3230Helix-turn-helix domain of transposase family ISL3 0.049-
pf:HTH_7226Helix-turn-helix domain of resolvase 0.27-
pf:HTH_23330Homeodomain-like domain 2.1e-05-
pf:HTH_Crp_2430Crp-like helix-turn-helix domain 0.00013-
pf:HTH_11428HTH domain 0.025-
pf:HTH_20526Helix-turn-helix domain 0.017-
pf:HTH_26630Cro/C1-type HTH DNA-binding domain 0.037-
pf:HTH_DeoR626DeoR-like helix-turn-helix domain 0.049-
pf:DUF1804631Protein of unknown function (DUF1804) 0.21-
pf:TrmB629Sugar-specific transcriptional regulator TrmB 0.44-
pf:HTH_Tnp_1_2733Helix-turn-helix of insertion element transposase 0.031-
pf:Crp726Bacterial regulatory proteins, crp family 0.0088-
pf:HTH_29730Winged helix-turn helix 0.0095-
pf:Sigma70_r4727Sigma-70, region 4 0.096-
pf:MarR_2726MarR family 0.12-
pf:YfeC-like8128 1.4e-57-
pf:HTH_17850Helix-turn-helix domain 3.2e-07-
pf:Sigma70_r4_2829Sigma-70, region 4 0.3-
pf:HTH_10830HTH DNA binding domain 0.19-
pf:Phage_CI_repr1029Bacteriophage CI repressor helix-turn-helix domain 0.14-
pf:YdaS_toxin1130 0.0043-
pf:Terminase_51135Putative ATPase subunit of terminase (gpP-like) 0.16-
pf:Exc2157Excisionase-like protein 0.024-

stm:STM2414 pf:HTH_59 pf:HTH_3 pf:HTH_28 pf:HTH_Tnp_ISL3 pf:HTH_7 pf:HTH_23 pf:HTH_Crp_2 pf:HTH_11 pf:HTH_20 pf:HTH_26 pf:HTH_DeoR pf:DUF1804 pf:TrmB pf:HTH_Tnp_1_2 pf:Crp pf:HTH_29 pf:Sigma70_r4 pf:MarR_2 pf:YfeC-like pf:HTH_17 pf:Sigma70_r4_2 pf:HTH_10 pf:Phage_CI_repr pf:YdaS_toxin pf:Terminase_5 pf:Exc

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