| Motif id | From | To | Definition | E value | Score |
| pf:Clp_N | 29 | 75 | Clp amino terminal domain, pathogenicity island component
| 0.049 | - |
| pf:AAA_16 | 213 | 390 | AAA ATPase domain
| 2.3e-07 | - |
| pf:ATPase_2 | 216 | 256 | ATPase domain predominantly from Archaea
| 0.82 | - |
| pf:TniB | 219 | 258 | Bacterial TniB protein
| 0.089 | - |
| pf:AAA_25 | 220 | 304 | AAA domain
| 0.11 | - |
| pf:AAA_7 | 225 | 258 | P-loop containing dynein motor region D3
| 0.23 | - |
| pf:DUF815 | 226 | 311 | Protein of unknown function (DUF815)
| 0.52 | - |
| pf:AAA_22 | 231 | 316 | AAA domain
| 0.06 | - |
| pf:AAA | 236 | 367 | ATPase family associated with various cellular activities (AAA)
| 1.8e-08 | - |
| pf:AAA_5 | 236 | 257 | AAA domain (dynein-related subfamily)
| 0.26 | - |
| pf:NACHT | 236 | 262 | NACHT domain
| 0.027 | - |
| pf:AAA_lid_9 | 376 | 467 | | 2.9e-30 | - |
| pf:Cyclin_N | 384 | 468 | Cyclin, N-terminal domain
| 0.0093 | - |
| pf:Zeta_toxin | 651 | 701 | Zeta toxin
| 0.00061 | - |
| pf:AAA_2 | 652 | 818 | AAA domain (Cdc48 subfamily)
| 5.1e-55 | - |
| pf:AAA_16 | 653 | 680 | AAA ATPase domain
| 1 | - |
| pf:Hpr_kinase_C | 654 | 675 | HPr Serine kinase C-terminal domain
| 0.16 | - |
| pf:AAA_22 | 655 | 694 | AAA domain
| 0.53 | - |
| pf:AAA_14 | 656 | 738 | AAA domain
| 0.32 | - |
| pf:nSTAND3 | 656 | 698 | | 0.26 | - |
| pf:AAA_5 | 657 | 775 | AAA domain (dynein-related subfamily)
| 3e-07 | - |
| pf:Sigma54_activat | 657 | 766 | Sigma-54 interaction domain
| 0.00096 | - |
| pf:AAA_7 | 657 | 700 | P-loop containing dynein motor region D3
| 0.28 | - |
| pf:AAA | 658 | 742 | ATPase family associated with various cellular activities (AAA)
| 1e-05 | - |
| pf:AAA_18 | 658 | 679 | AAA domain
| 0.22 | - |
| pf:CbiA | 658 | 679 | CobQ/CobB/MinD/ParA nucleotide binding domain
| 0.65 | - |
| pf:ClpB_D2-small | 825 | 899 | C-terminal, D2-small domain, of ClpB protein
| 1.6e-14 | - |