| Motif id | From | To | Definition | E value | Score |
| pf:PBP1_TM | 1 | 83 | Transmembrane domain of transglycosylase PBP1 at N-terminal
| 1.6e-34 | - |
| pf:UvrB_inter | 116 | 194 | | 2.5e-06 | - |
| pf:UB2H | 118 | 202 | Bifunctional transglycosylase second domain
| 2.5e-28 | - |
| pf:Transgly | 214 | 384 | Transglycosylase
| 1.8e-56 | - |
| pf:Transpeptidase | 478 | 717 | Penicillin binding protein transpeptidase domain
| 1.1e-19 | - |