| Entry | SW_score | bits | identity | overlap |
| cthe:Chro_0344 | 308 | 76.0 | 0.292 | 212 |
| cthe:Chro_0373 | 256 | 64.1 | 0.253 | 292 |
| cthe:Chro_0488 | 251 | 63.0 | 0.255 | 216 |
| cthe:Chro_0507 | 270 | 67.3 | 0.231 | 425 |
| cthe:Chro_0767 | 108 | 30.4 | 0.330 | 94 |
| cthe:Chro_1046 | 284 | 70.5 | 0.251 | 411 |
| cthe:Chro_1905 | 269 | 67.1 | 0.273 | 238 |
| cthe:Chro_2244 | 304 | 75.1 | 0.270 | 281 |
| cthe:Chro_2295 | 252 | 63.2 | 0.281 | 210 |
| cthe:Chro_2600 | 219 | 55.7 | 0.256 | 207 |
| cthe:Chro_2750 | 268 | 66.9 | 0.252 | 262 |
| cthe:Chro_3030 | 171 | 44.8 | 0.251 | 235 |
| cthe:Chro_3219 | 225 | 57.1 | 0.237 | 236 |
| cthe:Chro_3360 | 214 | 54.6 | 0.277 | 224 |
| cthe:Chro_3942 | 199 | 51.2 | 0.274 | 168 |
| cthe:Chro_3995 | 229 | 58.0 | 0.257 | 261 |
| cthe:Chro_4006 | 278 | 69.2 | 0.239 | 393 |
| cthe:Chro_4008 | 266 | 66.4 | 0.284 | 236 |
| cthe:Chro_4163 | 244 | 61.4 | 0.270 | 241 |
| cthe:Chro_4224 | 310 | 76.5 | 0.226 | 439 |
| cthe:Chro_4433 | 256 | 64.1 | 0.257 | 241 |
| cthe:Chro_4444 | 276 | 68.7 | 0.228 | 473 |
| cthe:Chro_4907 | 335 | 82.2 | 0.241 | 460 |
| cthe:Chro_5043 | 290 | 71.9 | 0.261 | 364 |
| cthe:Chro_5073 | 249 | 62.6 | 0.246 | 264 |
| cthe:Chro_5112 | 231 | 58.5 | 0.250 | 280 |
| cthe:Chro_5167 | 225 | 57.1 | 0.230 | 209 |
| cthe:Chro_5272 | 245 | 61.6 | 0.272 | 224 |
| cthe:Chro_5438 | 232 | 58.7 | 0.222 | 270 |
| cthe:Chro_5481 | 217 | 55.3 | 0.265 | 272 |