| Entry | SW_score | bits | identity | overlap |
| syf:Synpcc7942_0029 | 214 | 54.6 | 0.271 | 207 |
| syf:Synpcc7942_1408 | 162 | 42.7 | 0.250 | 108 |
| syf:Synpcc7942_0596 | 156 | 41.4 | 0.291 | 110 |
| syf:Synpcc7942_1092 | 152 | 40.4 | 0.324 | 102 |
| syf:Synpcc7942_1903 | 151 | 40.2 | 0.279 | 122 |
| syf:Synpcc7942_1748 | 120 | 33.1 | 0.320 | 128 |
| syf:Synpcc7942_0975 | 119 | 32.9 | 0.316 | 76 |
| syf:Synpcc7942_0124 | 104 | 29.5 | 0.346 | 52 |