| Entry | SW_score | bits | identity | overlap |
| syp:SYNPCC7002_A0446 | 366 | 89.2 | 0.291 | 268 |
| syp:SYNPCC7002_A0459 | 316 | 77.8 | 0.253 | 400 |
| syp:SYNPCC7002_A0870 | 254 | 63.7 | 0.244 | 328 |
| syp:SYNPCC7002_A1682 | 250 | 62.8 | 0.259 | 224 |
| syp:SYNPCC7002_A2735 | 231 | 58.5 | 0.262 | 225 |
| syp:SYNPCC7002_A1727 | 214 | 54.6 | 0.288 | 198 |
| syp:SYNPCC7002_A1665 | 210 | 53.7 | 0.261 | 218 |
| syp:SYNPCC7002_A0807 | 209 | 53.4 | 0.273 | 161 |