| Entry | SW_score | bits | identity | overlap |
| pol:Bpro_4570 | 1286 | 298.9 | 0.440 | 484 |
| pol:Bpro_0091 | 1134 | 264.3 | 0.381 | 486 |
| pol:Bpro_0055 | 1109 | 258.6 | 0.407 | 482 |
| pol:Bpro_2290 | 1108 | 258.4 | 0.381 | 480 |
| pol:Bpro_5132 | 1087 | 253.6 | 0.386 | 482 |
| pol:Bpro_5115 | 1085 | 253.1 | 0.376 | 481 |
| pol:Bpro_3685 | 1076 | 251.1 | 0.372 | 484 |
| pol:Bpro_2917 | 1042 | 243.3 | 0.371 | 480 |
| pol:Bpro_2844 | 977 | 228.5 | 0.368 | 478 |
| pol:Bpro_2450 | 947 | 221.7 | 0.345 | 473 |
| pol:Bpro_3422 | 913 | 213.9 | 0.354 | 477 |
| pol:Bpro_0086 | 908 | 212.8 | 0.331 | 483 |
| pol:Bpro_0062 | 884 | 207.3 | 0.339 | 472 |
| pol:Bpro_3221 | 828 | 194.5 | 0.355 | 467 |
| pol:Bpro_4519 | 808 | 190.0 | 0.340 | 444 |
| pol:Bpro_0128 | 788 | 185.4 | 0.326 | 457 |
| pol:Bpro_4702 | 769 | 181.1 | 0.320 | 453 |
| pol:Bpro_4547 | 745 | 175.6 | 0.293 | 499 |
| pol:Bpro_4691 | 735 | 173.3 | 0.322 | 463 |
| pol:Bpro_5303 | 633 | 150.1 | 0.303 | 462 |
| pol:Bpro_3952 | 625 | 148.3 | 0.281 | 495 |
| pol:Bpro_0406 | 547 | 130.5 | 0.298 | 467 |
| pol:Bpro_1625 | 291 | 72.1 | 0.230 | 482 |
| pol:Bpro_2298 | 223 | 56.6 | 0.241 | 428 |