| Entry | SW_score | bits | identity | overlap |
| rpu:CDC45_13415 | 1555 | 360.3 | 0.499 | 533 |
| rpu:CDC45_05235 | 1049 | 244.9 | 0.427 | 412 |
| rpu:CDC45_20225 | 926 | 216.9 | 0.381 | 433 |
| rpu:CDC45_03310 | 170 | 44.5 | 0.252 | 286 |
| rpu:CDC45_22000 | 126 | 34.5 | 0.500 | 48 |
| rpu:CDC45_03430 | 116 | 32.2 | 0.512 | 41 |
| rpu:CDC45_02275 | 115 | 32.0 | 0.564 | 39 |
| rpu:CDC45_08495 | 115 | 32.0 | 0.310 | 100 |
| rpu:CDC45_01570 | 114 | 31.8 | 0.450 | 40 |
| rpu:CDC45_11925 | 103 | 29.3 | 0.500 | 36 |
| rpu:CDC45_20150 | 101 | 28.8 | 0.500 | 44 |