| Entry | SW_score | bits | identity | overlap |
| rpu:CDC45_22360 | 619 | 146.9 | 0.347 | 331 |
| rpu:CDC45_00980 | 470 | 112.9 | 0.305 | 354 |
| rpu:CDC45_03120 | 469 | 112.7 | 0.304 | 381 |
| rpu:CDC45_03230 | 468 | 112.5 | 0.315 | 333 |
| rpu:CDC45_17925 | 458 | 110.2 | 0.299 | 381 |
| rpu:CDC45_16000 | 399 | 96.7 | 0.300 | 337 |
| rpu:CDC45_19780 | 356 | 86.9 | 0.274 | 310 |
| rpu:CDC45_17845 | 310 | 76.5 | 0.274 | 317 |
| rpu:CDC45_06205 | 287 | 71.2 | 0.277 | 368 |
| rpu:CDC45_07740 | 286 | 71.0 | 0.270 | 330 |
| rpu:CDC45_22690 | 276 | 68.7 | 0.267 | 285 |
| rpu:CDC45_23260 | 270 | 67.3 | 0.248 | 290 |
| rpu:CDC45_03270 | 260 | 65.1 | 0.272 | 290 |
| rpu:CDC45_11145 | 217 | 55.3 | 0.279 | 269 |
| rpu:CDC45_10545 | 190 | 49.1 | 0.259 | 328 |
| rpu:CDC45_12065 | 102 | 29.0 | 0.333 | 84 |
| rpu:CDC45_13905 | 101 | 28.8 | 0.342 | 76 |
| rpu:CDC45_04540 | 100 | 28.6 | 0.307 | 101 |