| Entry | SW_score | bits | identity | overlap |
| rpu:CDC45_23135 | 1623 | 375.8 | 0.520 | 515 |
| rpu:CDC45_14250 | 1579 | 365.7 | 0.508 | 516 |
| rpu:CDC45_05930 | 1495 | 346.6 | 0.480 | 515 |
| rpu:CDC45_07530 | 1091 | 254.5 | 0.435 | 519 |
| rpu:CDC45_20155 | 1079 | 251.7 | 0.434 | 530 |
| rpu:CDC45_23700 | 1074 | 250.6 | 0.573 | 342 |
| rpu:CDC45_24705 | 1070 | 249.7 | 0.505 | 398 |
| rpu:CDC45_17445 | 1067 | 249.0 | 0.506 | 389 |
| rpu:CDC45_19125 | 1064 | 248.3 | 0.417 | 533 |
| rpu:CDC45_16030 | 1063 | 248.1 | 0.460 | 430 |
| rpu:CDC45_03125 | 1058 | 247.0 | 0.546 | 355 |
| rpu:CDC45_05935 | 1031 | 240.8 | 0.547 | 331 |
| rpu:CDC45_09750 | 1014 | 236.9 | 0.408 | 512 |
| rpu:CDC45_24490 | 1005 | 234.9 | 0.398 | 522 |
| rpu:CDC45_06365 | 1002 | 234.2 | 0.585 | 294 |
| rpu:CDC45_22780 | 979 | 229.0 | 0.413 | 511 |
| rpu:CDC45_18895 | 925 | 216.6 | 0.499 | 337 |
| rpu:CDC45_16915 | 918 | 215.1 | 0.409 | 450 |
| rpu:CDC45_21810 | 912 | 213.7 | 0.480 | 344 |
| rpu:CDC45_23770 | 826 | 194.1 | 0.451 | 359 |
| rpu:CDC45_03475 | 512 | 122.5 | 0.328 | 317 |
| rpu:CDC45_22545 | 292 | 72.4 | 0.514 | 107 |
| rpu:CDC45_00115 | 278 | 69.2 | 0.253 | 324 |
| rpu:CDC45_17620 | 163 | 43.0 | 0.252 | 250 |