| Entry | SW_score | bits | identity | overlap |
| syp:SYNPCC7002_A1665 | 454 | 109.3 | 0.356 | 275 |
| syp:SYNPCC7002_A0870 | 410 | 99.3 | 0.274 | 325 |
| syp:SYNPCC7002_A0459 | 408 | 98.8 | 0.248 | 541 |
| syp:SYNPCC7002_A2735 | 373 | 90.8 | 0.287 | 356 |
| syp:SYNPCC7002_A0446 | 360 | 87.9 | 0.287 | 272 |
| syp:SYNPCC7002_A1682 | 311 | 76.7 | 0.263 | 342 |
| syp:SYNPCC7002_A0807 | 268 | 66.9 | 0.300 | 170 |
| syp:SYNPCC7002_A1727 | 251 | 63.0 | 0.269 | 167 |