| Entry | SW_score | bits | identity | overlap |
| sce:YKR095W | 470 | 112.9 | 0.202 | 1898 |
| sce:YDL058W | 456 | 109.7 | 0.211 | 1121 |
| sce:YEL038W | 443 | 106.8 | 0.388 | 250 |
| sce:YIL149C | 398 | 96.5 | 0.201 | 1778 |
| sce:YMR219W | 353 | 86.3 | 0.204 | 1605 |
| sce:YFR016C | 341 | 83.5 | 0.199 | 1302 |
| sce:YHR023W | 338 | 82.8 | 0.213 | 1109 |
| sce:YLR106C | 333 | 81.7 | 0.199 | 1279 |
| sce:YLR309C | 304 | 75.1 | 0.207 | 855 |
| sce:YDR356W | 295 | 73.0 | 0.215 | 985 |
| sce:YLR223C | 283 | 70.3 | 0.203 | 1142 |
| sce:YNL250W | 283 | 70.3 | 0.194 | 1160 |
| sce:YBR081C | 276 | 68.7 | 0.214 | 1362 |
| sce:YLR086W | 270 | 67.3 | 0.201 | 959 |
| sce:YDR464W | 266 | 66.4 | 0.198 | 1544 |
| sce:YML093W | 260 | 65.1 | 0.205 | 810 |
| sce:YGL086W | 259 | 64.8 | 0.222 | 666 |
| sce:YCL061C | 250 | 62.8 | 0.212 | 882 |
| sce:YJL074C | 247 | 62.1 | 0.215 | 1181 |
| sce:YHR077C | 246 | 61.9 | 0.209 | 608 |
| sce:YNL091W | 242 | 61.0 | 0.200 | 908 |
| sce:YOR195W | 240 | 60.5 | 0.202 | 842 |
| sce:YJR092W | 237 | 59.8 | 0.217 | 965 |
| sce:YPL085W | 236 | 59.6 | 0.195 | 706 |
| sce:YGR130C | 235 | 59.4 | 0.204 | 653 |
| sce:YLL021W | 231 | 58.5 | 0.202 | 1452 |
| sce:YDR285W | 231 | 58.5 | 0.201 | 840 |
| sce:YMR031C | 228 | 57.8 | 0.195 | 836 |
| sce:YKL105C | 226 | 57.3 | 0.200 | 840 |
| sce:YFL008W | 226 | 57.3 | 0.195 | 1034 |
| sce:YDL153C | 223 | 56.6 | 0.219 | 585 |
| sce:YGR196C | 223 | 56.6 | 0.181 | 854 |
| sce:YOL034W | 218 | 55.5 | 0.201 | 867 |
| sce:YCL014W | 218 | 55.5 | 0.200 | 855 |
| sce:YGL150C | 217 | 55.3 | 0.220 | 727 |
| sce:YGR116W | 217 | 55.3 | 0.204 | 878 |
| sce:YBR148W | 215 | 54.8 | 0.211 | 636 |
| sce:YDR150W | 215 | 54.8 | 0.190 | 2308 |
| sce:YBL047C | 215 | 54.8 | 0.187 | 780 |
| sce:YHR158C | 214 | 54.6 | 0.207 | 694 |
| sce:YFR031C | 212 | 54.1 | 0.207 | 789 |
| sce:YPL009C | 209 | 53.4 | 0.229 | 645 |
| sce:YPL190C | 208 | 53.2 | 0.249 | 249 |
| sce:YDR507C | 208 | 53.2 | 0.193 | 724 |
| sce:YDR217C | 208 | 53.2 | 0.191 | 900 |
| sce:YLR135W | 207 | 53.0 | 0.217 | 665 |
| sce:YLR383W | 207 | 53.0 | 0.203 | 848 |
| sce:YJR134C | 207 | 53.0 | 0.192 | 733 |
| sce:YDR227W | 204 | 52.3 | 0.196 | 1060 |
| sce:YDR310C | 203 | 52.1 | 0.173 | 917 |
| sce:YOR191W | 202 | 51.8 | 0.212 | 585 |
| sce:YGR162W | 190 | 49.1 | 0.251 | 335 |
| sce:YPR072W | 181 | 47.1 | 0.253 | 359 |
| sce:YOL145C | 160 | 42.3 | 0.283 | 244 |
| sce:YNL079C | 159 | 42.0 | 0.269 | 208 |
| sce:YOL054W | 157 | 41.6 | 0.264 | 201 |
| sce:YBL052C | 155 | 41.1 | 0.309 | 97 |
| sce:YCR042C | 152 | 40.4 | 0.277 | 329 |
| sce:YBR247C | 152 | 40.4 | 0.273 | 150 |
| sce:YML088W | 151 | 40.2 | 0.255 | 231 |
| sce:YGR017W | 126 | 34.5 | 0.388 | 49 |
| sce:YLR055C | 123 | 33.8 | 0.317 | 82 |
| sce:YJR072C | 118 | 32.7 | 0.305 | 105 |
| sce:YHR027C | 115 | 32.0 | 0.330 | 106 |
| sce:YFL002C | 112 | 31.3 | 0.316 | 114 |
| sce:YKL160W | 110 | 30.9 | 0.391 | 64 |
| sce:YLR331C | 107 | 30.2 | 0.307 | 101 |
| sce:YMR017W | 100 | 28.6 | 0.333 | 78 |