| Entry | SW_score | bits | identity | overlap |
| neo:CYG48_09020 | 190 | 49.1 | 0.277 | 220 |
| neo:CYG48_10615 | 176 | 45.9 | 0.289 | 135 |
| neo:CYG48_09520 | 149 | 39.8 | 0.341 | 135 |
| neo:CYG48_15730 | 146 | 39.1 | 0.303 | 132 |
| neo:CYG48_10960 | 143 | 38.4 | 0.330 | 91 |
| neo:CYG48_02935 | 136 | 36.8 | 0.312 | 109 |
| neo:CYG48_05970 | 129 | 35.2 | 0.311 | 90 |
| neo:CYG48_12495 | 128 | 35.0 | 0.325 | 126 |
| neo:CYG48_15740 | 124 | 34.1 | 0.340 | 100 |
| neo:CYG48_16000 | 119 | 32.9 | 0.300 | 120 |
| neo:CYG48_01170 | 118 | 32.7 | 0.305 | 82 |
| neo:CYG48_19955 | 109 | 30.6 | 0.311 | 103 |
| neo:CYG48_16070 | 109 | 30.6 | 0.305 | 95 |
| neo:CYG48_11500 | 108 | 30.4 | 0.311 | 106 |
| neo:CYG48_08120 | 105 | 29.7 | 0.367 | 60 |
| neo:CYG48_08275 | 102 | 29.0 | 0.362 | 58 |
| neo:CYG48_15925 | 102 | 29.0 | 0.333 | 63 |